Fahmi Khalifa

Dr. Fahmi Khalifa

Electrical and Computer Engineering, Morgan State University, Baltimore, Maryland, USA
orcid

Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
17 November 2014 in Medical Physics
Verified
Journal Article
Open access
Fahmi KhalifaFahmi Khalifa
Fahmi Khalifa
ASAhmed Soliman
Ahmed Soliman
Ayman El-BazAyman El-Baz
Ayman El-Baz
MEMohamed Abou El-Ghar
Mohamed Abou El-Ghar
TETarek El‐Diasty
Tarek El‐Diasty
ADAmy C. Dwyer
Amy C. Dwyer
Purpose: To present a review of most commonly used techniques to analyze dynamic contrast‐enhanced magnetic resonance imaging (DCE‐MRI), discusses their strengths and weaknesses, and outlines recent clinical applications of findings from these approaches.Methods: DCE‐MRI allows for noninvasive quantitative analysis of contrast agent (CA) transient in soft tissues. Thus, it is an important and well‐established tool to reveal microvasculature and perfusion in various clinical applications. In the last three decades, a host of nonparametric and parametric models and methods have been developed in order to quantify the CA's perfusion into tissue and estimate perfusion‐related parameters (indexes) from signal‐ or concentration–time curves. These indexes are widely used in various clinical applications for the detection, characterization, and therapy monitoring of different diseases.Results: Promising theoretical findings and experimental results for the reviewed models and techniques in a variety of clinical applications suggest that DCE‐MRI is a clinically relevant imaging modality, which can be used for early diagnosis of different diseases, such as breast and prostate cancer, renal rejection, and liver tumors.Conclusions: Both nonparametric and parametric approaches for DCE‐MRI analysis possess the ability to quantify tissue perfusion.

11 October 2013 in Acta Neuropathologica Communications
Verified
Journal Article
Open access
PDF file
MCManuel Casanova
Manuel Casanova
Ayman El-BazAyman El-Baz
Ayman El-Baz
SKShweta S Kamat
Shweta S Kamat
BDBrynn A Dombroski
Brynn A Dombroski
Fahmi KhalifaFahmi Khalifa
Fahmi Khalifa
ASAndrew E Switala
Andrew E Switala
Previous reports indicate the presence of histological abnormalities in the brains of individuals with autism spectrum disorders (ASD) suggestive of a dysplastic process. In this study we identified areas of abnormal cortical thinning within the cerebral cortex of ASD individuals and examined the same for neuronal morphometric abnormalities by using computerized image analysis. The study analyzed celloidin-embedded and Nissl-stained serial full coronal brain sections of 7 autistic (ADI-R diagnosed) and 7 age/sex-matched neurotypicals. Sections were scanned and manually segmented before implementing an algorithm using Laplace’s equation to measure cortical width. Identified areas were then subjected to analysis for neuronal morphometry. Results of our study indicate the presence within our ASD population of circumscribed foci of diminished cortical width that varied among affected individuals both in terms of location and overall size with the frontal lobes being particularly involved. Spatial statistic indicated a reduction in size of neurons within affected areas. Granulometry confirmed the presence of smaller pyramidal cells and suggested a concomitant reduction in the total number of interneurons. The neuropathology is consistent with a diagnosis of focal cortical dysplasia (FCD). Results from the medical literature (e.g., heterotopias) and our own study suggest that the genesis of this cortical malformation seemingly resides in the heterochronic divisions of periventricular germinal cells. The end result is that during corticogenesis radially migrating neuroblasts (future pyramidal cells) are desynchronized in their development from those that follow a tangential route (interneurons). The possible presence of a pathological mechanism in common among different conditions expressing an autism-like phenotype argue in favor of considering ASD a “sequence” rather than a syndrome. Focal cortical dysplasias in ASD may serve to explain the high prevalence of seizures and sensory abnormalities in this patient population.

1 July 2012 in IEEE Transactions on Biomedical Engineering
Verified
Journal Article
Closed access
Ayman El-BazAyman El-Baz
Ayman El-Baz
Ahmed ElnakibAhmed Elnakib
Ahmed Elnakib
Fahmi KhalifaFahmi Khalifa
Fahmi Khalifa
MEMohamed Abou El-Ghar
Mohamed Abou El-Ghar
PMPatrick McClure
Patrick McClure
GGG. Gimelrfarb
G. Gimelrfarb
Accurate automatic extraction of a 3-D cerebrovascular system from images obtained by time-of-flight (TOF) or phase contrast (PC) magnetic resonance angiography (MRA) is a challenging segmentation problem due to the small size objects of interest (blood vessels) in each 2-D MRA slice and complex surrounding anatomical structures (e.g., fat, bones, or gray and white brain matter). We show that due to the multimodal nature of MRA data, blood vessels can be accurately separated from the background in each slice using a voxel-wise classification based on precisely identified probability models of voxel intensities. To identify the models, an empirical marginal probability distribution of intensities is closely approximated with a linear combination of discrete Gaussians (LCDG) with alternate signs, using our previous EM-based techniques for precise linear combination of Gaussian-approximation adapted to deal with the LCDGs. The high accuracy of the proposed approach is experimentally validated on 85 real MRA datasets (50 TOF and 35 PC) as well as on synthetic MRA data for special 3-D geometrical phantoms of known shapes.

12 September 2016 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
ASAhmed Soliman
Ahmed Soliman
Fahmi KhalifaFahmi Khalifa
Fahmi Khalifa
Ahmed ElnakibAhmed Elnakib
Ahmed Elnakib
MEMohamed Abou El-Ghar
Mohamed Abou El-Ghar
NDNeal Dunlap
Neal Dunlap
Ayman El-BazAyman El-Baz
Ayman El-Baz
To accurately segment pathological and healthy lungs for reliable computer-aided disease diagnostics, a stack of chest CT scans is modeled as a sample of a spatially inhomogeneous joint 3D Markov-Gibbs random field (MGRF) of voxel-wise lung and chest CT image signals (intensities). The proposed learnable MGRF integrates two visual appearance sub-models with an adaptive lung shape submodel. The first-order appearance submodel accounts for both the original CT image and its Gaussian scale space (GSS) filtered version to specify local and global signal properties, respectively. Each empirical marginal probability distribution of signals is closely approximated with a linear combination of discrete Gaussians (LCDG), containing two positive dominant and multiple sign-alternate subordinate DGs. The approximation is separated into two LCDGs to describe individually the lungs and their background, i.e., all other chest tissues. The second-order appearance submodel quantifies conditional pairwise intensity dependencies in the nearest voxel 26-neighborhood in both the original and GSS-filtered images. The shape submodel is built for a set of training data and is adapted during segmentation using both the lung and chest appearances. The accuracy of the proposed segmentation framework is quantitatively assessed using two public databases (ISBI VESSEL12 challenge and MICCAI LOLA11 challenge) and our own database with, respectively, 20, 55, and 30 CT images of various lung pathologies acquired with different scanners and protocols. Quantitative assessment of our framework in terms of Dice similarity coefficients, 95-percentile bidirectional Hausdorff distances, and percentage volume differences confirms the high accuracy of our model on both our database (98.4±1.0%, 2.2±1.0 mm, 0.42±0.10%) and the VESSEL12 database (99.0±0.5%, 2.1±1.6 mm, 0.39±0.20%), respectively. Similarly, the accuracy of our approach is further verified via a blind evaluation by the organizers of the LOLA11 competition, where an average overlap of 98.0% with the expert's segmentation is yielded on all 55 subjects with our framework being ranked first among all the state-of-the-art techniques compared.

4 November 2020 in Entropy
Verified
Journal Article
Open access
PDF file
IYIbrahim Yasser
Ibrahim Yasser
MMMohamed A. Mohamed
Mohamed A. Mohamed
ASAhmed S. Samra
Ahmed S. Samra
Fahmi KhalifaFahmi Khalifa
Fahmi Khalifa
Chaos-based encryption has shown an increasingly important and dominant role in modern multimedia cryptography compared with traditional algorithms. This work proposes novel chaotic-based multimedia encryption schemes utilizing 2D alteration models for high secure data transmission. A novel perturbation-based data encryption for both confusion and diffusion rounds is proposed. Our chaotification structure is hybrid, in which multiple maps are combined combines for media encryption. Blended chaotic maps are used to generate the control parameters for the permutation (shuffling) and diffusion (substitution) structures. The proposed schemes not only maintain great encryption quality reproduced by chaotic, but also possess other advantages, including key sensitivity and low residual clarity. Extensive security and differential analyses documented that the proposed schemes are efficient for secure multimedia transmission as well as the encrypted media possesses resistance to attacks. Additionally, statistical evaluations using well-known metrics for specific media types, show that proposed encryption schemes can acquire low residual intelligibility with excessive nice recovered statistics. Finally, the advantages of the proposed schemes have been highlighted by comparing it against different state-of-the-art algorithms from literature. The comparative performance results documented that our schemes are extra efficacious than their data-specific counterpart methods.

11 February 2022 in Diagnostics
Verified
Journal Article
Open access
PDF file
Mohamed ElsharkawyMohamed Elsharkawy
Mohamed Elsharkawy
ASAhmed Sharafeldeen
Ahmed Sharafeldeen
Ahmed SolimanAhmed Soliman
Ahmed Soliman
Fahmi KhalifaFahmi Khalifa
Fahmi Khalifa
MOHAMMED GHAZALMOHAMMED GHAZAL
MOHAMMED GHAZAL
Ayman El-BazAyman El-Baz
Ayman El-Baz
Early diagnosis of diabetic retinopathy (DR) is of critical importance to suppress severe damage to the retina and/or vision loss. In this study, an optical coherence tomography (OCT)-based computer-aided diagnosis (CAD) method is proposed to detect DR early using structural 3D retinal scans. This system uses prior shape knowledge to automatically segment all retinal layers of the 3D-OCT scans using an adaptive, appearance-based method. After the segmentation step, novel texture features are extracted from the segmented layers of the OCT B-scans volume for DR diagnosis. For every layer, Markov–Gibbs random field (MGRF) model is used to extract the 2nd-order reflectivity. In order to represent the extracted image-derived features, we employ cumulative distribution function (CDF) descriptors. For layer-wise classification in 3D volume, using the extracted Gibbs energy feature, an artificial neural network (ANN) is fed the extracted feature for every layer. Finally, the classification outputs for all twelve layers are fused using a majority voting schema for global subject diagnosis. A cohort of 188 3D-OCT subjects are used for system evaluation using different k-fold validation techniques and different validation metrics. Accuracy of 90.56%, 93.11%, and 96.88% are achieved using 4-, 5-, and 10-fold cross-validation, respectively. Additional comparison with deep learning networks, which represent the state-of-the-art, documented the promise of our system’s ability to diagnose the DR early.