Hui-Qi Qu

Dr. Hui-Qi Qu

Center for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA
orcid
Section Board Member, Biomedicines

Research Focus & Metrics

Academic Career Length

27Years (2000-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 July 2007 in Nature
Verified
Journal Article
Closed access
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HHHakon Hakonarson
Hakon Hakonarson
SGStruan F. A. Grant
Struan F. A. Grant
JBJonathan P. Bradfield
Jonathan P. Bradfield
LMLuc Marchand
Luc Marchand
CKCecilia E. Kim
Cecilia E. Kim
CPConstantin Polychronakos
Constantin Polychronakos

11 February 2010 in Nature
Verified
Journal Article
Open access
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SSStuart B. Smith
Stuart B. Smith
Hui-Qi QuHui-Qi Qu
Hui-Qi Qu
NTNadine Taleb
Nadine Taleb
NKNina Y. Kishimoto
Nina Y. Kishimoto
DSDavid W. Scheel
David W. Scheel
MGMichael S. German
Michael S. German
Insulin from the β-cells of the pancreatic islets of Langerhans controls energy homeostasis in vertebrates, and its deficiency causes diabetes mellitus. During embryonic development, the transcription factor neurogenin 3 (Neurog3) initiates the differentiation of the β-cells and other islet cell types from pancreatic endoderm, but the genetic program that subsequently completes this differentiation remains incompletely understood. Here we show that the transcription factor Rfx6 directs islet cell differentiation downstream of Neurog3. Mice lacking Rfx6 failed to generate any of the normal islet cell types except for pancreatic-polypeptide-producing cells. In human infants with a similar autosomal recessive syndrome of neonatal diabetes, genetic mapping and subsequent sequencing identified mutations in the human RFX6 gene. These studies demonstrate a unique position for Rfx6 in the hierarchy of factors that coordinate pancreatic islet development in both mice and humans. Rfx6 could prove useful in efforts to generate β-cells for patients with diabetes.

29 September 2011 in PLOS Genetics
Verified
Journal Article
Open access
PDF file
JBJonathan P. Bradfield
Jonathan P. Bradfield
Hui-Qi QuHui-Qi Qu
Hui-Qi Qu
KWKai Wang
Kai Wang
HZHaitao Zhang
Haitao Zhang
PSPatrick M. Sleiman
Patrick M. Sleiman
HHHakon Hakonarson
Hakon Hakonarson
Diabetes impacts approximately 200 million people worldwide, of whom approximately 10% are affected by type 1 diabetes (T1D). The application of genome-wide association studies (GWAS) has robustly revealed dozens of genetic contributors to the pathogenesis of T1D, with the most recent meta-analysis identifying in excess of 40 loci. To identify additional genetic loci for T1D susceptibility, we examined associations in the largest meta-analysis to date between the disease and ∼2.54 million SNPs in a combined cohort of 9,934 cases and 16,956 controls. Targeted follow-up of 53 SNPs in 1,120 affected trios uncovered three new loci associated with T1D that reached genome-wide significance. The most significantly associated SNP (rs539514, P = 5.66×10−11) resides in an intronic region of the LMO7 (LIM domain only 7) gene on 13q22. The second most significantly associated SNP (rs478222, P = 3.50×10−9) resides in an intronic region of the EFR3B (protein EFR3 homolog B) gene on 2p23; however, the region of linkage disequilibrium is approximately 800 kb and harbors additional multiple genes, including NCOA1, C2orf79, CENPO, ADCY3, DNAJC27, POMC, and DNMT3A. The third most significantly associated SNP (rs924043, P = 8.06×10−9) lies in an intergenic region on 6q27, where the region of association is approximately 900 kb and harbors multiple genes including WDR27, C6orf120, PHF10, TCTE3, C6orf208, LOC154449, DLL1, FAM120B, PSMB1, TBP, and PCD2. These latest associated regions add to the growing repertoire of gene networks predisposing to T1D. Despite the fact that there is clearly a large genetic component to type 1 diabetes (T1D), uncovering the genes contributing to this disease has proven challenging. However, in the past three years there has been relatively major progress in this regard, with advances in genetic screening technologies allowing investigators to scan the genome for variants conferring risk for disease without prior hypotheses. Such genome-wide association studies have revealed multiple regions of the genome to be robustly and consistently associated with T1D. More recent findings have been a consequence of combining of multiple datasets from independent investigators in meta-analyses, which have more power to pick up additional variants contributing to the trait. In the current study, we describe the largest meta-analysis of T1D genome-wide genotyped datasets to date, which combines six large studies. As a consequence, we have uncovered three new signals residing at the chromosomal locations 13q22, 2p23, and 6q27, which went on to be replicated in independent sample sets. These latest associated regions add to the growing repertoire of gene networks predisposing to T1D.

12 May 2020 in European Respiratory Journal
Verified
Journal Article
Open access
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HYHai-Qiong Yu
Hai-Qiong Yu
BSBao-Qing Sun
Bao-Qing Sun
ZFZhangfu Fang
Zhangfu Fang
JZJin-Cun Zhao
Jin-Cun Zhao
XLXiao-Yu Liu
Xiao-Yu Liu
NZNan-Shan Zhong
Nan-Shan Zhong
Humoral immune response to SARS-CoV-2 showed an early response of IgA, instead of IgM, in COVID-19 patients. As highlighted by our study, enhanced IgA responses observed in severe COVID-19 might confer damaging effects in severe COVID-19.

14 June 2011 in PLOS ONE
Verified
Journal Article
Open access
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Hui-Qi QuHui-Qi Qu
Hui-Qi Qu
QLQuan Li
Quan Li
ARAnne R. Rentfro
Anne R. Rentfro
SFSusan P. Fisher-Hoch
Susan P. Fisher-Hoch
JMJoseph B. McCormick
Joseph B. McCormick
The lack of standardized reference range for the homeostasis model assessment-estimated insulin resistance (HOMA-IR) index has limited its clinical application. This study defines the reference range of HOMA-IR index in an adult Hispanic population based with machine learning methods. This study investigated a Hispanic population of 1854 adults, randomly selected on the basis of 2000 Census tract data in the city of Brownsville, Cameron County. Machine learning methods, support vector machine (SVM) and Bayesian Logistic Regression (BLR), were used to automatically identify measureable variables using standardized values that correlate with HOMA-IR; K-means clustering was then used to classify the individuals by insulin resistance. Our study showed that the best cutoff of HOMA-IR for identifying those with insulin resistance is 3.80. There are 39.1% individuals in this Hispanic population with HOMA-IR>3.80. Our results are dramatically different using the popular clinical cutoff of 2.60. The high sensitivity and specificity of HOMA-IR>3.80 for insulin resistance provide a critical fundamental for our further efforts to improve the public health of this Hispanic population.

20 October 2026 in American Journal of Respiratory and Critical Care Medicine
Verified
Journal Article
Open access
Hui-Qi QuHui-Qi Qu
Hui-Qi Qu
HQHaijun Qiu
Haijun Qiu
FMFrank D Mentch
Frank D Mentch
CCChristopher J Cardinale
Christopher J Cardinale
HHHakon Hakonarson
Hakon Hakonarson