Karl Harber

Mr. Karl Harber

Amsterdam UMC, Vrije Universiteit Medisch Centrum
+1
orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 September 2020 in Metabolites
Verified
Journal Article
Open access
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Karl HarberKarl Harber
Karl Harber
KGKyra de Goede
Kyra de Goede
SVSanne Verberk
Sanne Verberk
EMElisa Meinster
Elisa Meinster
HVHelga de Vries
Helga de Vries
Jan Van den BosscheJan Van den Bossche
Jan Van den Bossche
Immunometabolism revealed the crucial role of cellular metabolism in controlling immune cell phenotype and functions. Macrophages, key immune cells that support progression of numerous inflammatory diseases, have been well described as undergoing vast metabolic rewiring upon activation. The immunometabolite succinate particularly gained a lot of attention and emerged as a crucial regulator of macrophage responses and inflammation. Succinate was originally described as a metabolite that supports inflammation via distinct routes. Recently, studies have indicated that succinate and its receptor SUCNR1 can suppress immune responses as well. These apparent contradictory effects might be due to specific experimental settings and particularly the use of distinct succinate forms. We therefore compared the phenotypic and functional effects of distinct succinate forms and receptor mouse models that were previously used for studying succinate immunomodulation. Here, we show that succinate can suppress secretion of inflammatory mediators IL-6, tumor necrosis factor (TNF) and nitric oxide (NO), as well as inhibit Il1b mRNA expression of inflammatory macrophages in a SUCNR1-independent manner. We also observed that macrophage SUCNR1 deficiency led to an enhanced inflammatory response without addition of exogenous succinate. While our study does not reveal new mechanistic insights into how succinate elicits different inflammatory responses, it does indicate that the inflammatory effects of succinate and its receptor SUCNR1 in macrophages are clearly context dependent.

22 January 2024 in Redox Biology
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Journal Article
Open access
Karl HarberKarl Harber
Karl Harber
ANAnnette E. Neele
Annette E. Neele
CRCindy Paa. van Roomen
Cindy Paa. van Roomen
MGMarion Jj. Gijbels
Marion Jj. Gijbels
LBLinda Beckers
Linda Beckers
MWMenno de Winther
Menno de Winther
Inflammatory macrophages are key drivers of atherosclerosis that can induce rupture-prone vulnerable plaques. Skewing the plaque macrophage population towards a more protective phenotype and reducing the occurrence of clinical events is thought to be a promising method of treating atherosclerotic patients. In the current study, we investigate the immunomodulatory properties of itaconate, an immunometabolite derived from the TCA cycle intermediate cis-aconitate and synthesised by the enzyme Aconitate Decarboxylase 1 (ACOD1, also known as IRG1), in the context of atherosclerosis. Ldlr-/- atherogenic mice transplanted with Acod1-/- bone marrow displayed a more stable plaque phenotype with smaller necrotic cores and showed increased recruitment of monocytes to the vessel intima. Macrophages from Acod1-/- mice contained more lipids whilst also displaying reduced induction of apoptosis. Using multi-omics approaches, we identify a metabolic shift towards purine metabolism, in addition to an altered glycolytic flux towards production of glycerol for triglyceride synthesis. Overall, our data highlight the potential of therapeutically blocking ACOD1 with the aim of stabilizing atherosclerotic plaques.

27 October 2021 in Cancers
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DLDyantha I. van der Lee
Dyantha I. van der Lee
GKGeorgia Koutsoumpli
Georgia Koutsoumpli
Rogier ReijmersRogier Reijmers
Rogier Reijmers
MHM. Willy Honders
M. Willy Honders
RJRob C. M. de Jong
Rob C. M. de Jong
MGMarieke Griffioen
Marieke Griffioen
Acute myeloid leukemia (AML) is a hematological malignancy caused by clonal expansion of myeloid progenitor cells. Most patients with AML respond to chemotherapy, but relapses often occur and infer a very poor prognosis. Thirty to thirty-five percent of AMLs carry a four base pair insertion in the nucleophosmin 1 gene (NPM1) with a C-terminal alternative reading frame of 11 amino acids. We previously identified various neopeptides from the alternative reading frame of mutant NPM1 (dNPM1) on primary AML and isolated an HLA-A*02:01-restricted T-cell receptor (TCR) that enables human T-cells to kill AML cells upon retroviral gene transfer. Here, we isolated T-cells recognizing the dNPM1 peptide AVEEVSLRK presented in HLA-A*11:01. The TCR cloned from a T-cell clone recognizing HLA-A*11:01+ primary AML cells conferred in vitro recognition and lysis of AML upon transfer to CD8 cells, but failed to induce an anti-tumor effect in immunodeficient NSG mice engrafted with dNPM1 OCI-AML3 cells. In conclusion, our data show that AVEEVSLRK is a dNPM1 neoantigen on HLA-A*11:01+ primary AMLs. CD8 cells transduced with an HLA-A*11:01-restricted TCR for dNPM1 were reactive against AML in vitro. The absence of reactivity in a preclinical mouse model requires further preclinical testing to predict the potential efficacy of this TCR in clinical development.

1 June 2019 in Trends in Endocrinology & Metabolism
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Journal Article
Closed access
KGKyra E. de Goede
Kyra E. de Goede
Karl HarberKarl Harber
Karl Harber
Jan Van den BosscheJan Van den Bossche
Jan Van den Bossche

19 June 2021 in Cancers
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Journal Article
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KGKyra de Goede
Kyra de Goede
SVSanne Verberk
Sanne Verberk
JBJeroen Baardman
Jeroen Baardman
Karl HarberKarl Harber
Karl Harber
YKYvette van Kooyk
Yvette van Kooyk
Jan Van den BosscheJan Van den Bossche
Jan Van den Bossche
Cancer cells rely on ATP-citrate lyase (Acly)-derived acetyl-CoA for lipid biogenesis and proliferation, marking Acly as a promising therapeutic target. However, inhibitors may have side effects on tumor-associated macrophages (TAMs). TAMs are innate immune cells abundant in the tumor microenvironment (TME) and play central roles in tumorigenesis, progression and therapy response. Since macrophage Acly deletion was previously shown to elicit macrophages with increased pro- and decreased anti-inflammatory responses in vitro, we hypothesized that Acly targeting may elicit anti-tumor responses in macrophages, whilst inhibiting cancer cell proliferation. Here, we used a myeloid-specific knockout model to validate that absence of Acly decreases IL-4-induced macrophage activation. Using two distinct tumor models, we demonstrate that Acly deletion slightly alters tumor immune composition and TAM phenotype in a tumor type-dependent manner without affecting tumor growth. Together, our results indicate that targeting Acly in macrophages does not have detrimental effects on myeloid cells.

14 March 2019 in EBioMedicine
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Journal Article
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Karl HarberKarl Harber
Karl Harber
SVSanne G.S. Verberk
Sanne G.S. Verberk
Jan Van den BosscheJan Van den Bossche
Jan Van den Bossche
Despite the use and success of cholesterol- and blood pressure-lowering agents, cardiovascular disease (CVD) remains a major cause of mortality worldwide, with about 1 in 4 deaths being related to this chronic inflammatory disease. Therefore, the field is in constant search for alternative treatment strategies. Since the development and progression of atherosclerosis is a highly complex process, studies aiming to discover new therapies and diagnostics should take this multifactorial aspect into account. High-throughput –omics approaches including metabolomics, lipidomics, genomics, (single cell) transcriptomics, cytomics and proteomics provide such a tool and have been applied in atherosclerosis studies [ 1 x [1] Mokou. Proteomics based identification of KDM5 histone demethylases associated with cardiovascular disease. eBioMedicine. 2019; Google Scholar See all References , 2 x [2] Kim, K., Shim, D., Lee, J.S., Zaitsev, K., Williams, J.W., Kim, K.W. et al. Transcriptome analysis reveals nonfoamy rather than foamy plaque macrophages are proinflammatory in atherosclerotic murine models. Circ Res. 2018; 123: 1127–1142 Google Scholar See all References , 3 x [3] Winkels, H., Ehinger, E., Vassallo, M., Buscher, K., Dinh, H.Q., Kobiyama, K. et al. Atlas of the immune cell repertoire in mouse atherosclerosis defined by single-cell RNA-sequencing and mass cytometry. Circ Res. 2018; 122: 1675–1688 Google Scholar See all References , 4 x [4] Tomas, L., Edsfeldt, A., Mollet, I.G., Perisic Matic, L., Prehn, C., Adamski, J. et al. Altered metabolism distinguishes high-risk from stable carotid atherosclerotic plaques. Eur Heart J. 2018 Jun 21; 39: 2301–2310 https://doi.org/10.1093/eurheartj/ehy124 Google Scholar See all References ]. Yet, their translation towards the clinic remains limited for various reasons.