Mehmet Kıvrak

Prof. Dr. Mehmet Kıvrak

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 April 2021 in Computer Methods and Programs in Biomedicine
Verified
Journal Article
Closed access
Mehmet KıvrakMehmet Kıvrak
Mehmet Kıvrak
EGEmek GÜLDOĞAN
Emek GÜLDOĞAN
Cemil ColakCemil Colak
Cemil Colak

22 November 2024 in Diagnostics
Verified
Journal Article
Open access
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Mehmet KıvrakMehmet Kıvrak
Mehmet Kıvrak
UAUgur Avci
Ugur Avci
HUHakkı Uzun
Hakkı Uzun
CACuneyt Ardic
Cuneyt Ardic
Background and Objective: Diabetes Mellitus is a long-term, multifaceted metabolic condition that necessitates ongoing medical management. Hypogonadism is a syndrome that is a clinical and/or biochemical indicator of testosterone deficiency. Cross-sectional studies have reported that 20–80.4% of all men with Type 2 diabetes have hypogonadism, and Type 2 diabetes is related to low testosterone. This study presents an analysis of the use of ML and EL classifiers in predicting testosterone deficiency. In our study, we compared optimized traditional ML classifiers and three EL classifiers using grid search and stratified k-fold cross-validation. We used the SMOTE method for the class imbalance problem. Methods: This database contains 3397 patients for the assessment of testosterone deficiency. Among these patients, 1886 patients with Type 2 diabetes were included in the study. In the data preprocessing stage, firstly, outlier/excessive observation analyses were performed with LOF and missing value analyses were performed with random forest. The SMOTE is a method for generating synthetic samples of the minority class. Four basic classifiers, namely MLP, RF, ELM and LR, were used as first-level classifiers. Tree ensemble classifiers, namely ADA, XGBoost and SGB, were used as second-level classifiers. Results: After the SMOTE, while the diagnostic accuracy decreased in all base classifiers except ELM, sensitivity values increased in all classifiers. Similarly, while the specificity values decreased in all classifiers, F1 score increased. The RF classifier gave more successful results on the base-training dataset. The most successful ensemble classifier in the training dataset was the ADA classifier in the original data and in the SMOTE data. In terms of the testing data, XGBoost is the most suitable model for your intended use in evaluating model performance. XGBoost, which exhibits a balanced performance especially when the SMOTE is used, can be preferred to correct class imbalance. Conclusions: The SMOTE is used to correct the class imbalance in the original data. However, as seen in this study, when the SMOTE was applied, the diagnostic accuracy decreased in some models but the sensitivity increased significantly. This shows the positive effects of the SMOTE in terms of better predicting the minority class.

29 June 2021 in The Journal of Cognitive Systems
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Journal Article
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Mehmet KıvrakMehmet Kıvrak
Mehmet Kıvrak
Obesity occurs as a result of excessive fat storage in the body and brings along physical and mental problems [1]. The physical function has been associated with impaired quality of life in various areas such as distress in society, sexual function, self-esteem, and work-related quality of life [2]. The prevalence of obesity has been steadily increasing over the past few decades and is now unprecedented. This increase has occurred in almost all ages, genders, and races. These data show that the segments of individuals in the highest weight categories i.e. (BMI> 40 kg / m2) increased proportionally more than those in the lower BMI categories (BMI

24 October 2025 in Biology
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HUHasan Ucuzal
Hasan Ucuzal
Mehmet KıvrakMehmet Kıvrak
Mehmet Kıvrak
Ovarian cancer’s high mortality is primarily due to late-stage diagnosis, underscoring the critical need for improved early detection tools. This study develops and validates explainable artificial intelligence (XAI) models to discriminate malignant from benign ovarian masses using readily available demographic and laboratory data. A dataset of 309 patients (140 malignant, 169 benign) with 47 clinical parameters was analyzed. The Boruta algorithm selected 19 significant features, including tumor markers (CA125, HE4, CEA, CA19-9, AFP), hematological indices, liver function tests, and electrolytes. Five ensemble machine learning algorithms were optimized and evaluated using repeated stratified 5-fold cross-validation. The Gradient Boosting model achieved the highest performance with 88.99% (±3.2%) accuracy, 0.934 AUC-ROC, and 0.782 Matthews correlation coefficient. SHAP analysis identified HE4, CEA, globulin, CA125, and age as the most globally important features. Unlike black-box approaches, our XAI framework provides clinically interpretable decision pathways through LIME and SHAP visualizations, revealing how feature values push predictions toward malignancy or benignity. Partial dependence plots illustrated non-linear risk relationships, such as a sharp increase in malignancy probability with CA125 > 35 U/mL. This explainable approach demonstrates that ensemble models can achieve high diagnostic accuracy using routine lab data alone, performing comparably to established clinical indices while ensuring transparency and clinical plausibility. The integration of state-of-the-art XAI techniques highlights established biomarkers and reveals potential novel contributors like inflammatory and hepatic indices, offering a pragmatic, scalable triage tool to augment existing diagnostic pathways, particularly in resource-constrained settings.

17 December 2024 in Pharmaceuticals
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MYMERVE HÜNER YIGIT
MERVE HÜNER YIGIT
MAMehtap ATAK
Mehtap ATAK
EYErtugrul Yigit
Ertugrul Yigit
ZSZehra Topal Suzan
Zehra Topal Suzan
Mehmet KıvrakMehmet Kıvrak
Mehmet Kıvrak
HUHuseyin Avni Uydu
Huseyin Avni Uydu
Objective: In this study, we aimed to evaluate the potential effects of white tea (WT) in the atherosclerosis process characterized by oxidative stress, inflammation, and dyslipidemia. Methods: In our study, apolipoprotein E knockout (ApoE−/−) mice (RRID: IMSR_JAX:002052) and C57BL/6J mice (RRID: IMSR_JAX:000664) were used. In the atherosclerosis model induced by an atherogenic diet (AD), WT was administered via oral gavage at two different concentrations. The animals were sacrificed by decapitation under anesthesia, and their serum and aortic tissues were collected. Total cholesterol (TC), triglyceride (TG), interleukin (IL)-1β, IL-6, IL-10, IL-12, tumor necrosis factor-α (TNF-α), interferon-γ, myeloperoxidase, paraoxonase-1, lipoprotein-associated phospholipase A2, oxidized low-density lipoprotein (Ox-LDL), lectin-like oxidized LDL receptor (LOX-1), a disintegrin, and metalloprotease (ADAM) 10 and 17 activities were determined via colorimetric, enzyme-linked immunoassay, and fluorometric methods. Results: WT supplementation decreased serum Ox-LDL, LOX-1, TC, and TG levels by approximately 50%. TNF- and IL-6 levels were reduced by approximately 30% in the aortic arch. In addition, ADAM10/17 enzyme activities were found to be reduced by approximately 25%. However, no change in the AD-induced fibrotic cap structure was observed in the aortic root. Conclusions: The findings indicate that white tea effectively reduced oxidative stress, inflammation, and dyslipidemia in atherosclerosis but does not affect atheroma plaque morphology.

22 August 2022 in Süleyman Demirel Üniversitesi Vizyoner Dergisi
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TBTahir Baysal
Tahir Baysal
Mehmet KıvrakMehmet Kıvrak
Mehmet Kıvrak
Migration is a concept as old as human history. Large-scale migrations have occurred in every period of human history. There are many economic, social, political and legal reasons behind migration movements. It is known that economic reasons are the most determining factors in the occurrence of migration. Generally, the direction of migration is from rural to urban, underdeveloped regions to developed regions, east to west in Turkey. Population is largely concentrated in cities. Cities with a high level of economic development are the cities with the most populous population. While many socio-economic indicators can be used to reveal the level of economic development, an evaluation can also be made based on the GDP data of the provinces, which is considered as a combination of these indicators. In the study, a statistical significance relationship is sought between migration data and GDP data of the provinces. The analysis method used is the cluster analysis. According to the results, the basic hypothesis of the study is confirmed at a rate of 79%. That means, the provinces with high GDP levels receive immigration, while the provinces with low GDP emigrate.