Mervi Honkatukia

Dr. Mervi Honkatukia


Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 April 2020 in Genes
Verified
Journal Article
Open access
PDF file
Kisun PokharelKisun Pokharel
Kisun Pokharel
JPJaana Peippo
Jaana Peippo
MWMelak B Weldenegodguad
Melak B Weldenegodguad
Mervi HonkatukiaMervi Honkatukia
Mervi Honkatukia
MLMenghua Li
Menghua Li
JKJuha Kantanen
Juha Kantanen
The majority of pregnancy loss in ruminants occurs during the preimplantation stage, which is thus the most critical period determining reproductive success. Here, we performed a comparative transcriptome study by sequencing total mRNA from corpus luteum (CL) collected during the preimplantation stage of pregnancy in Finnsheep, Texel and F1 crosses. A total of 21,287 genes were expressed in our data. Highly expressed autosomal genes in the CL were associated with biological processes such as progesterone formation (STAR, CYP11A1, and HSD3B1) and embryo implantation (e.g., TIMP1, TIMP2 and TCTP). Among the list of differentially expressed genes, sialic acid-binding immunoglobulin (Ig)-like lectins (SIGLEC3, SIGLEC14, SIGLEC8), ribosomal proteins (RPL17, RPL34, RPS3A, MRPS33) and chemokines (CCL5, CCL24, CXCL13, CXCL9) were upregulated in Finnsheep, while four multidrug resistance-associated proteins (MRPs) were upregulated in Texel ewes. A total of 17 known genes and two uncharacterized non-coding RNAs (ncRNAs) were differentially expressed in breed-wise comparisons owing to the flushing diet effect. The significantly upregulated TXNL1 gene indicated potential for embryonic diapause in Finnsheep and F1. Moreover, we report, for the first time in any species, several genes that are active in the CL during early pregnancy (including TXNL1, SIGLEC14, SIGLEC8, MRP4, and CA5A).

18 September 2021 in Animals
Verified
Journal Article
Open access
PDF file
UOUlla Ovaska
Ulla Ovaska
ABAuli Bläuer
Auli Bläuer
CKCharlotte Kroløkke
Charlotte Kroløkke
MKMaria Kjetså
Maria Kjetså
JKJuha Kantanen
Juha Kantanen
Mervi HonkatukiaMervi Honkatukia
Mervi Honkatukia
Native breeds are domestic animal populations that have adapted to their habitats. The genetic value of breeds has been known for a long time, and recently more attention has been paid to their cultural value. Due to both ecological and cultural significance, it is important that native breeds continue to be bred in their native environments. This is supported by various financial support schemes. Support schemes rarely cover the financial gap in output compared to commercial breeds. A solution to this has been sought in special products, such as cheese or wool, and other businesses, such as animal-assisted care and tourism. Less attention has been paid to the role of administration and good governance in the maintenance of native breeds. In this study, a questionnaire was sent to all registered keepers of native breeds in Finland. This survey clarified their reasons for keeping native breeds and their ideas for improving governance structures and practices. The results were discussed in stakeholder workshops, and in a Nordic context. The results show that genetic and cultural values are recognised in several documents and programmes, but farmers need to be engaged more in the design of support schemes and practices.

27 December 2023 in Scientific Reports
Verified
Journal Article
Open access
PDF file
Kisun PokharelKisun Pokharel
Kisun Pokharel
MWMelak B Weldenegodguad
Melak B Weldenegodguad
SDStephan Dudeck
Stephan Dudeck
Mervi HonkatukiaMervi Honkatukia
Mervi Honkatukia
HLHeli Lindeberg
Heli Lindeberg
JKJuha Kantanen
Juha Kantanen
Domestic reindeer (Rangifer tarandus) play a vital role in the culture and livelihoods of indigenous people across northern Eurasia. These animals are well adapted to harsh environmental conditions, such as extreme cold, limited feed availability and long migration distances. Therefore, understanding the genomics of reindeer is crucial for improving their management, conservation and utilisation. In this study, we have generated a new genome assembly for the Fennoscandian domestic reindeer with high contiguity, making it the most complete reference genome for reindeer to date. The new genome assembly was utilised to explore genetic diversity, population structure and selective sweeps in Eurasian Rangifer tarandus populations which was based on the largest population genomic dataset for reindeer, encompassing 58 individuals from diverse populations. Phylogenetic analyses revealed distinct genetic clusters, with the Finnish wild forest reindeer (Rangifer tarandus fennicus) standing out as a unique subspecies. Divergence time estimates suggested a separation of ~ 52 thousand years ago (Kya) between the northern European Rangifer tarandus fennicus and Rangifer tarandus tarandus. Our study identified four main genetic clusters: Fennoscandian, the eastern/northern Russian and Alaskan group, the Finnish forest reindeer, and the Svalbard reindeer. Furthermore, two independent reindeer domestication processes were inferred, suggesting separate origins for the domestic Fennoscandian and eastern/northern Russian reindeer. Notably, shared genes under selection, including retroviral genes, point towards molecular domestication processes that aided adaptation of this species to diverse environments.

27 September 2024 in Scientific Reports
Verified
Journal Article
Open access
PDF file
DRDaniil Ruvinskiy
Daniil Ruvinskiy
AAAndreia Amaral
Andreia Amaral
MWMelak B Weldenegodguad
Melak B Weldenegodguad
IAInnokentyi Ammosov
Innokentyi Ammosov
Mervi HonkatukiaMervi Honkatukia
Mervi Honkatukia
Kisun PokharelKisun Pokharel
Kisun Pokharel
The drastic change in global climate has led to in-depth studies of the geneticresources of native cattle adapted to challenging environments. Native cattle breeds may harbor unique genetic mechanisms that have enabled them adapt to their given environmental conditions. Adipose tissues are key factors in the regulation of metabolism and energy balance and are crucial for the molecular switches needed to adapt to rapid environmental and nutritional changes. The transcriptome landscape of four adipose tissues was used in this study to investigate the differential gene expression profiles in three local breeds, Yakutian cattle (Sakha Republic), Northern Finncattle (Finland), Mirandesa cattle (Portugal) and commercial Holstein cattle. A total of 26 animals (12 cows, 14 bulls) yielded 81 samples of perirenal adipose tissue (n = 26), metacarpal adipose tissue (n = 26), tailhead adipose tissue (n = 26) and prescapular adipose tissue (n = 3). More than 17,000 genes were expressed in our dataset. Principal component analysis of the normalized expression profiles revealed a differential expression profile of the metacarpal adipose tissue. We found that the genes upregulated in the metacarpal adipose tissue of Yakutian cattle, such as NR4A3, TEKT3, and FGGY, were associated with energy metabolism and response to cold temperatures. In Mirandesa cattle, the upregulated genes in perirenal adipose tissue were related to immune response and inflammation (AVPR2, CCN1, and IL6), while in Northern Finncattle, the upregulated genes appeared to be involved in various physiological processes, including energy metabolism (IGFBP2). According to the sex-based comparisons, the most interesting result was the upregulation of the TPRG1 gene in three tissues of Yakutian cattle females, suggesting that adaptation is related to feed efficiency. The highest number of differentially expressed genes was found between Yakutian cattle and Holstein, several of which were associated with immunity in Yakutian cattle, indicating potential differences in disease resistance and immunity between the two breeds. This study highlights the vast difference in gene expression profiles in adipose tissues among breeds from different climatic environments, most likely highlighting selective pressure and the potential significance of the uniquely important regulatory functions of metacarpal adipose tissue.

28 February 2024 in Society & Animals
Verified
Journal Article
Closed access
PDF file
CKCharlotte Kroløkke
Charlotte Kroløkke
ANAnne Nørkjær-Bang
Anne Nørkjær-Bang
UOUlla Ovaska
Ulla Ovaska
Mervi HonkatukiaMervi Honkatukia
Mervi Honkatukia
This article employs critical cultural and anthropological perspectives to investigate the ways in which Nordic mountain cattle are kinned and become positioned as kin. It does so by empirically foregrounding photographic material, elicited from the 3MC Traditional Transboundary Cattle Breeds’ photo competition, along with photo elicited interviews with 13 of the participating photographers. Nordic mountain cattle become “kinned” as “mothers,” “family members,” “friends,” “colleagues,” and “pets” through a range of kinship-making practices such as naming, gendering, and anthropomorphizing cattle with distinct human-like personalities. The article concludes by turning to the affective values and cultural logics that situate mountain cattle as forms of Nordic cultural heritage. In these entanglements, mountain cattle resurrect Nordic cultural heritage and temporality facilitating new Nordic naturecultures in which humans are simultaneously (re)connected to nature and cultivated as future (new) citizens.

21 June 2019 in bioRxiv
Verified
Preprint
Open access
PDF file
Kisun PokharelKisun Pokharel
Kisun Pokharel
JPJaana Peippo
Jaana Peippo
MWMelak B Weldenegodguad
Melak B Weldenegodguad
Mervi HonkatukiaMervi Honkatukia
Mervi Honkatukia
MLMenghua Li
Menghua Li
JKJuha Kantanen
Juha Kantanen
The majority of pregnancy loss in ruminants occurs during the preimplantation stage, which is thus the most critical period determining reproductive success. While ovulation rate is the major determinant of litter size in sheep, interactions among the conceptus, corpus luteum and endometrium are essential for pregnancy success. Here, we performed a comparative transcriptome study by sequencing total mRNA from corpus luteum (CL) collected during the preimplantation stage of pregnancy in Finnsheep, Texel and F1 crosses, and mapping the RNA-Seq reads to the latest Rambouillet reference genome. A total of 21,287 genes were expressed in our dataset. Highly expressed autosomal genes in the CL were associated with biological processes such as progesterone formation ( STAR, CYP11A1 , and HSD3B1 ) and embryo implantation (eg. TIMP1, TIMP2 and TCTP ). Among the list of differentially expressed genes, a group of sialic acid-binding immunoglobulin (Ig)-like lectins (Siglecs), solute carriers ( SLC13A5, SLC15A2, SLC44A5 ) and chemokines ( CCL5, CXCL13, CXCL9 ) were upregulated in Finnsheep, while four multidrug resistance-associated proteins (MRPs) were upregulated in Texel ewes. A total of 17 genes and two non-coding RNAs (ncRNA) were differentially expressed in breed-wise comparisons owing to flushing diet effect. Moreover, we report, for the first time in any species, several genes that are active in the CL during early pregnancy (including SIGLEC13, SIGLEC14, SIGLEC6, MRP4 , and CA5A ). Importantly, functional analysis of differentially expressed genes suggested that Finnsheep have a better immune system than Texel and that high prolificacy in Finnsheep might be governed by immune system regulation.