The present study demonstrates the Ni toxicity-ameliorating and growth-promoting abilities of two different bacterial isolates when applied to wheat (Triticum aestivum L.) as the host plant. Two bacterial strains tolerant to Ni stress were isolated from wheat seeds and selected based on their ability to improve the germination of wheat plants; they were identified as Bacillus megaterium AFI1 and Paenibacillus nicotianae AFI2. The protective effects of these epiphytic bacteria against Ni stress were studied in model experiments with two wheat cultivars: Ni stress-tolerant Leningradskaya 6 and susceptible Chinese spring. When these isolates were used as the inoculants applied to Ni-treated wheat plants, the growth parameters and the levels of photosynthetic pigments of the two wheat cultivars both under normal and Ni-stress conditions were increased, though B. megaterium AFI1 had a more pronounced ameliorative effect on the Ni contents in plant tissues due to its synthesis of siderophores. Over the 10 days of Ni exposure, the plant growth promotion bacteria (PGPB) significantly reduced the lipid peroxidation (LPO), ascorbate peroxidase (APX), superoxide dismutase (SOD) activities and proline content in the leaves of both wheat cultivars. The PGPB also increased peroxidase (POX) activity and the levels of chlorophyll a, chlorophyll b, and carotenoids in the wheat leaves. It was concluded that B. megaterium AFI1 is an ideal candidate for bioremediation and wheat growth promotion against Ni-induced oxidative stress, as it increases photosynthetic pigment contents, induces the antioxidant defense system, and lowers Ni metal uptake.

Biomodified mineral fertilizers (BMFs) were produced by enriching the ammophos fertilizer with PGPR Bacillus velezensis BS89 with the use of two technologies: BMF 1, the ammophos fertilizer with the addition of spores of Bacillus velezensis BS89 on a dry carrier (diatomite); and BMF2, ammophos granules treated with spores of Bacillus velezensis BS89 in a cell suspension. The effects of BMFs on maize growth and productivity and the rhizosphere bacterial community were assessed. BMFs significantly increased maize growth, dry matter, minerals, starch and protein contents in maize grain. The application of biomodified mineral fertilizers resulted in the significant increase in the yield and some parameters of maize plants such as ear length and number of kernels in the row. The yield was increased by 7.5–7.6%, ear length by 9%, and number of kernels in the row by 6.7–7%, as compared with ammophos. However, we found no considerable differences in the composition of the bacterial community of the maize rhizosphere after the use of BMFs as compared with the use of ammophos at the level of the phyla, which was confirmed by the ecological indices of biodiversity: the Shannon index and the Simpson index. Comparison of the experimental variants with bulk soil showed differences in the microbiome composition of the dominant bacterial phyla. A greater abundance of Proteobacteria and Bacteroidetes and a lower abundance of Chloroflexi was registered in bulk soil as compared with the other experimental variants where maize plants were present. The highest percentage (5.3%) of unidentified taxonomic phyla was also found in bulk soil. Our studies showed that maize is the main structuring factor during formation of the microbiome composition in the rhizosphere. The application of biomodified fertilizers BMF1 and BMF2 considerably increased the abundance of bacteria representing the minority of the community, namely, those from the phyla Verrucomicrobia, Chloroflexi, Planctomycetes, Proteobacteria, Firmicutes and Chlamydiae, as compared with the use of ammophos. Thus, the application of biomodified mineral fertilizers is a promising agronomic and ecological strategy for boosting maize yield and the quality of grain under field conditions.

Due to the increased anthropogenic load, crops are polluted with heavy metals, including nickel (Ni). This is a serious environmental problem, as Ni penetrates barrier-free into cereal crops and accumulates in the grains used by humans and animals for food. Wheat is one of the main staple crops, cultivated in many countries. This study suggested that plant growth promoting bacteria (PGPB) with varying enzymatic activities could help wheat plants to cope with Ni stress by reducing Ni toxicity and regulating the metal’s homeostasis. PGPB Bacillus megaterium AFI1 has a strong phosphate-solubilizing activity and produces siderophores, while Paenibacillus nicotianae AFI2 has nitrogen-fixing and silicate-solubilizing activities. Both strains produce indole and polysaccharides and have 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity. PGPB under Ni exposure (100 mg/kg of soil) significantly increased grain yield (by 34–42%) and decreased (by 20–33%) Ni content in wheat grains. PGPB also decreased malondialdehyde (MDA) and H₂O₂ levels in wheat plants under Ni stress. The contents of iron (Fe), boron (B), nitrogen (N) and phosphorus (P) decreased significantly and potassium (K) and zinc (Zn) oppositely increased significantly in all plant organs under Ni exposure. The inoculation with AFI1 mainly increased P and Fe, and the inoculation with AFI2 increased N and silica (Si) in wheat grains under Ni stress. In our experiments, under nickel exposure PGPB Bacillus megaterium AFI1 and Paenibacillus nicotianae AFI2 increased antioxidant protection of plants by decreasing the level of stress ethylene and regulating the homeostasis of nutrients in wheat plants. These PGPB can be considered as promising candidates for the development of biologicals to be used for growing plants in soils with low levels of nickel contamination.

The present study demonstrated the differences in the seed metabolome and mycobiome of two Aegilops tauschii Coss accessions with different resistance to brown rust and powdery mildew. We hypothesized that the seeds of resistant accession k-1958 Ae. tauschii ssp. strangulata can contain a larger number of metabolites with antifungal activity compared with the seeds of susceptible Ae. tauschii ssp meyeri k-340, which will determine differences in the seed fungal community. Our study emphasizes the differences in the seed metabolome of the studied Ae. tauschii accessions. The resistant accession k-1958 had a higher content of glucose and organic acids, including pyruvic, salicylic and azelaic acid, as well as pipecolic acids, galactinol, glycerol and sitosterol. The seeds of Ae. tauschii-resistant accession k-1958 were found to contain more active substances with antifungal activity. The genera Cladosporium and Alternaria were dominant in the seed mycobiome of the resistant accession. The genera Alternaria, Blumeria and Cladosporium dominated in seed mycobiome of susceptible accession k-340. In the seed mycobiome of the resistant k-1958, a higher occurrence of saprotrophic micromycetes was found, and many of the micromycetes were biocontrol agents. It was concluded that differences in the seed metabolome of Ae. tauschii contributed to the determination of the differences in mycobiomes.