Pankaj K Bhowmik

Dr. Pankaj K Bhowmik

Research Officer at the National Research Council (NRC) of Canada
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orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 December 2020 in Agriculture
Verified
Journal Article
Open access
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Moutoshi ChakrabortyMoutoshi Chakraborty
Moutoshi Chakraborty
Mirza HasanuzzamanMirza Hasanuzzaman
Mirza Hasanuzzaman
Mahfuz RahmanMahfuz Rahman
Mahfuz Rahman
AKArifur Rahman Khan
Arifur Rahman Khan
Pankaj K BhowmikPankaj K Bhowmik
Pankaj K Bhowmik
Tofazzal IslamTofazzal Islam
Tofazzal Islam
The chitosan (CHT) biopolymer is a de-acetylated chitin derivative that exists in the outer shell of shrimp, shellfish, lobster or crabs, as well as fungal cell walls. Because of its biodegradability, environmental non-toxicity, and biocompatibility, it is an ideal resource for sustainable agriculture. The CHT emerged as a promising agent used as a plant growth promoter and also as an antimicrobial agent. It induces plant growth by influencing plant physiological processes like nutrient uptake, cell division, cell elongation, enzymatic activation and synthesis of protein that can eventually lead to increased yield. It also acts as a catalyst to inhibit the growth of plant pathogens, and alter plant defense responses by triggering multiple useful metabolic pathways. This review emphasizes the role and mechanisms of CHT as a plant growth promoter and disease suppressor, and its future implications in agriculture.

25 April 2018 in Scientific Reports
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Journal Article
Open access
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Pankaj K BhowmikPankaj K Bhowmik
Pankaj K Bhowmik
EEEvan Ellison
Evan Ellison
BPBrittany Polley
Brittany Polley
VBVenkatesh Bollina
Venkatesh Bollina
MKManoj Kulkarni
Manoj Kulkarni
SKSateesh Kagale
Sateesh Kagale
CRISPR/Cas9 genome editing is a transformative technology that will facilitate the development of crops to meet future demands. However, application of gene editing is hindered by the long life cycle of many crop species and because desired genotypes generally require multiple generations to achieve. Single-celled microspores are haploid cells that can develop into double haploid plants and have been widely used as a breeding tool to generate homozygous plants within a generation. In this study, we combined the CRISPR/Cas9 system with microspore technology and developed an optimized haploid mutagenesis system to induce genetic modifications in the wheat genome. We investigated a number of factors that may affect the delivery of CRISPR/Cas9 reagents into microspores and found that electroporation of a minimum of 75,000 cells using 10–20 µg DNA and a pulsing voltage of 500 V is optimal for microspore transfection using the Neon transfection system. Using multiple Cas9 and sgRNA constructs, we present evidence for the seamless introduction of targeted modifications in an exogenous DsRed gene and two endogenous wheat genes, including TaLox2 and TaUbiL1. This study demonstrates the value and feasibility of combining microspore technology and CRISPR/Cas9-based gene editing for trait discovery and improvement in plants.

3 March 2021 in Frontiers in Plant Science
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Journal Article
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DADinesh Adhikary
Dinesh Adhikary
MKManoj Kulkarni
Manoj Kulkarni
AEAliaa El-Mezawy
Aliaa El-Mezawy
SMSaied Mobini
Saied Mobini
MEMohamed Elhiti
Mohamed Elhiti
Pankaj K BhowmikPankaj K Bhowmik
Pankaj K Bhowmik
In recent years high-THC (psychoactive) and low-THC (industrial hemp) type cannabis (Cannabis sativaL.) have gained immense attention in medical, food, and a plethora of other consumer product markets. Among the planting materials used for cultivation, tissue culture clones provide various advantages such as economies of scale, production of disease-free and true-to-type plants for reducing the risk of GMP-EuGMP level medical cannabis production, as well as the development and application of various technologies for genetic improvement. Various tissue culture methods have the potential application with cannabis for research, breeding, and novel trait development, as well as commercial mass propagation. Although tissue culture techniques for plant regeneration and micropropagation have been reported for different cannabis genotypes and explant sources, there are significant variations in the response of cultures and the morphogenic pathway. Methods for many high-yielding elite strains are still rudimentary, and protocols are not established. With a recent focus on sequencing and genomics in cannabis, genetic transformation systems are applied to medical cannabis and hemp for functional gene annotation via traditional and transient transformation methods to create novel phenotypes by gene expression modulation and to validate gene function. This review presents the current status of research focusing on different aspects of tissue culture, including micropropagation, transformation, and the regeneration of medicinal cannabis and industrial hemp transformants. Potential future tissue culture research strategies helping elite cannabis breeding and propagation are also presented.

23 February 2024 in Food Hydrocolloids
Verified
Journal Article
Closed access
AKAbouzar Karimi
Abouzar Karimi
Pankaj K BhowmikPankaj K Bhowmik
Pankaj K Bhowmik
TYTrent C. Yang
Trent C. Yang
ASAnusha Samaranayaka
Anusha Samaranayaka
Lingyun ChenLingyun Chen
Lingyun Chen

21 September 2023 in Frontiers in Plant Science
Verified
Journal Article
Open access
Pankaj K BhowmikPankaj K Bhowmik
Pankaj K Bhowmik
WYWei Yan
Wei Yan
CHConnor Hodgins
Connor Hodgins
BPBrittany Polley
Brittany Polley
TWTom Warkentin
Tom Warkentin
Michel AlianiMichel Aliani
Michel Aliani
Introduction: Although pulses are nutritious foods containing high amounts of protein, fiber and phytochemicals, their consumption and use in the food industry have been limited due to the formation of unappealing flavors/aromas described as beany, green, and grassy. Lipoxygenase (LOX) enzymes are prevalent among pulse seeds, and their activity can lead to the formation of specific volatile organic compounds (VOCs) from certain polyunsaturated fatty acids (PUFAs). As a widespread issue in legumes, including soybean, these VOCs have been linked to certain unappealing taste perception of foods containing processed pulse seeds.Methods: To address this problem in pea and as proof of principle to promote the wider use of pulses, a Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) construct was designed to create null alleles (knockouts) of PsLOX2 which had been implicated in the generation of VOCs in peas.Results and discussion: Successful CRISPR/Cas9-mediated LOX gene editing of stable transgenic pea lines (TGP) was confirmed by DNA sequencing of the wild type (WT) and TGP pslox2 mutant lines. These lines were also assessed for LOX activity, PUFA levels, and VOCs. Compared to WT peas, the TGP lines showed a significant reduction (p < 0.05) in LOX activity and in the concentration of key VOCs, including hexanal, 2-hexenal, heptanal, (E)-2-heptenal, (E,E)-2,4-heptadienal, 1-octen-3-ol, octanal, (E)-2-octenal (E,E)-2,4-nonadienal and furan-2-pentyl. The content of two essential PUFAs, linoleic and α-linolenic acids, the known substrates of LOX in plants, was higher in TGP flours, indicating the efficacy of the CRISPR-mediated gene editing in minimizing their oxidation and the further modification of PUFAs and their products. The collection of VOCs from the headspace of ground pea seeds, using a portable eNose also distinguished the TGP and WT lines. Multiple regression analysis showed that LOX activity correlated with the two VOCs, heptanal and (E,E)-2,4-heptadienal in pea flours. Partial Least Squares Regression (PLS-R) plot for selected PUFAs, VOCs, and sensor responses in WT and TGP lines showed distinct clusters for WT and TGP lines. Together this data demonstrates the utility of CRISPR mediated mutagenesis of PsLOX2 to quickly improve aroma and fatty acid (FA) profiles of pea seeds of an elite Canadian variety.

30 October 2023 in Foods
Verified
Journal Article
Open access
PDF file
NANancy Asen
Nancy Asen
Rotimi AlukoRotimi Aluko
Rotimi Aluko
Alex MartynenkoAlex Martynenko
Alex Martynenko
AUAlphonsus C Utioh
Alphonsus C Utioh
Pankaj K BhowmikPankaj K Bhowmik
Pankaj K Bhowmik
Yellow field peas (Pisum sativum L.) hold significant value for producers, researchers, and ingredient manufacturers due to their wealthy composition of protein, starch, and micronutrients. The protein quality in peas is influenced by both intrinsic factors like amino acid composition and spatial conformations and extrinsic factors including growth and processing conditions. The existing literature substantiates that the structural modulation and optimization of functional, organoleptic, and nutritional attributes of pea proteins can be obtained through a combination of chemical, physical, and enzymatic approaches, resulting in superior protein ingredients. This review underscores recent methodologies in pea protein extraction aimed at enhancing yield and functionality for diverse food systems and also delineates existing research gaps related to mitigating off-flavor issues in pea proteins. A comprehensive examination of conventional dry and wet methods is provided, in conjunction with environmentally friendly approaches like ultrafiltration and enzyme-assisted techniques. Additionally, the innovative application of hydrodynamic cavitation technology in protein extraction is explored, focusing on its prospective role in flavor amelioration. This overview offers a nuanced understanding of the advancements in pea protein extraction methods, catering to the interests of varied stakeholders in the field.