Paula Braga Gomes

Dr. Paula Braga Gomes

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Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 April 2022 in Marine Biology
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ICIsadora Cord
Isadora Cord
LNLucas T. Nunes
Lucas T. Nunes
CBCristiane X. Barroso
Cristiane X. Barroso
AFAndrea S. Freire
Andrea S. Freire
OGOtto B. F. Gadig
Otto B. F. Gadig
SFSergio R. Floeter
Sergio R. Floeter

25 August 2016 in Genome Biology and Evolution
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CHChen Huang
Chen Huang
JMJean-Etienne Morlighem
Jean-Etienne Morlighem
HZHefeng Zhou
Hefeng Zhou
ÉLÉrica P Lima
Érica P Lima
Paula Braga GomesPaula Braga Gomes
Paula Braga Gomes
Gandhi Rádis-BaptistaGandhi Rádis-Baptista
Gandhi Rádis-Baptista
Protopalythoa is a zoanthid that, together with thousands of predominantly marine species, such as hydra, jellyfish, and sea anemones, composes the oldest eumetazoan phylum, i.e., the Cnidaria. Some of these species, such as sea wasps and sea anemones, are highly venomous organisms that can produce deadly toxins for preying, for defense or for territorial disputes. Despite the fact that hundreds of organic and polypeptide toxins have been characterized from sea anemones and jellyfish, practically nothing is known about the toxin repertoire in zoanthids. Here, based on a transcriptome analysis of the zoanthid Protopalythoa variabilis, numerous predicted polypeptides with canonical venom protein features are identified. These polypeptides comprise putative proteins from different toxin families: neurotoxic peptides, hemostatic and hemorrhagic toxins, membrane-active (pore-forming) proteins, protease inhibitors, mixed-function venom enzymes, and venom auxiliary proteins. The synthesis and functional analysis of two of these predicted toxin products, one related to the ShK/Aurelin family and the other to a recently discovered anthozoan toxin, displayed potent in vivo neurotoxicity that impaired swimming in larval zebrafish. Altogether, the complex array of venom-related transcripts that are identified in P. variabilis, some of which are first reported in Cnidaria, provides novel insight into the toxin distribution among species and might contribute to the understanding of composition and evolution of venom polypeptides in toxiferous animals.

13 July 2017 in Scientific Reports
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CHChen Huang
Chen Huang
JMJean-Etienne Morlighem
Jean-Etienne Morlighem
JCJing Cai
Jing Cai
QLQiwen Liao
Qiwen Liao
CPCARLOS DANIEL PEREZ
CARLOS DANIEL PEREZ
SLSimon Ming-Yuen Lee
Simon Ming-Yuen Lee
Long non-coding RNAs (lncRNAs) have been shown to play regulatory roles in a diverse range of biological processes and are associated with the outcomes of various diseases. The majority of studies about lncRNAs focus on model organisms, with lessened investigation in non-model organisms to date. Herein, we have undertaken an investigation on lncRNA in two zoanthids (cnidarian): Protolpalythoa varibilis and Palythoa caribaeorum. A total of 11,206 and 13,240 lncRNAs were detected in P. variabilis and P. caribaeorum transcriptome, respectively. Comparison using NONCODE database indicated that the majority of these lncRNAs is taxonomically species-restricted with no identifiable orthologs. Even so, we found cases in which short regions of P. caribaeorum’s lncRNAs were similar to vertebrate species’ lncRNAs, and could be associated with lncRNA conserved regulatory functions. Consequently, some high-confidence lncRNA-mRNA interactions were predicted based on such conserved regions, therefore revealing possible involvement of lncRNAs in posttranscriptional processing and regulation in anthozoans. Moreover, investigation of differentially expressed lncRNAs, in healthy colonies and colonial individuals undergoing natural bleaching, indicated that some up-regulated lncRNAs in P. caribaeorum could posttranscriptionally regulate the mRNAs encoding proteins of Ras-mediated signal transduction pathway and components of innate immune-system, which could contribute to the molecular response of coral bleaching.

24 November 2014 in Journal of the Marine Biological Association of the United Kingdom
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ESErika Flávia Crispim de Santana
Erika Flávia Crispim de Santana
AAAmanda Lacerda Alves
Amanda Lacerda Alves
ASAndré De Melo Santos
André De Melo Santos
MCMaria Da Gloria G.S. Cunha
Maria Da Gloria G.S. Cunha
CPCARLOS DANIEL PEREZ
CARLOS DANIEL PEREZ
Paula Braga GomesPaula Braga Gomes
Paula Braga Gomes
This study examined the trophic ecology of the zoanthidPalythoa caribaeorumin tropical reefs and evaluated its role in the energy flow in that ecosystem. Colonies of this species were sampled in the infralittoral zone of reefs in north-eastern Brazil in 2008. We calculated the richness, total abundance, relative abundance and frequency of occurrence of prey items. The biovolumes and weighted biovolumes of prey were calculated to characterize the most important food items in terms of their biomasses. To evaluate the selectivity, zoanthid and plankton samples were collected in 2010. Pennate diatoms were the most abundant and most frequent prey and, together with invertebrate eggs, constituted the most important food items in terms of their biomasses. There were no significant differences in abundance or richness among the different beaches studied, nor between the different seasons. The mean size of prey items within the polyps was significantly smaller than of the general plankton, indicating thatP. caribaeorumselected for (or limited) certain prey sizes. This species predominantly fed on diatoms, and did not take advantage of many other prey items abundant in the plankton. Our results indicate thatP. caribaeorumis suspensivorous and feeds principally on small phytoplankton. As this species is prey for benthic organisms such as polychaetes and nektonic organisms, our results indicate the importance of this zoanthid in tropical reef ecosystems as a primary consumer that serves as an energy transfer link between the planktonic environment and the nektonic and benthic spheres.

1 March 2009 in Anais da Academia Brasileira de Ciências
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ELEduardo J.B. Lima
Eduardo J.B. Lima
Paula Braga GomesPaula Braga Gomes
Paula Braga Gomes
JSJosé R.B. Souza
José R.B. Souza
The edible sea urchin Echinometra lucunter (Linnaeus, 1758) is a very common species on the sublittoral-midlittoral in Brazilian rocky shores. The aim of this work was to describe the gametogenesis and reproductive strategy of the E. lucunter population at Muro Alto beach in the Northeast coast of Brazil from August 2004 to August 2005. A total of 240 specimens were collected on the sandstone reef flat from a tidepool during spring low tides. The overall sex ratio was1.12:1,withoutsignificanttemporalvariationexceptinOctober2004. Firsts sexual maturity ocurred in individuals from a diameter of 20.8 mm. There was not a significant difference in gonad index between females and males during the sampling period. The female's gonad index variation was associated with a well-defined spawning, corroborated by the histological analysis of the gonads, which demonstrates sex differences of the gamete production. By contrast, the males showed no clear pattern. It is suggested that continuous reproduction with seasonal peaks in the E. lucunter population occurs at Muro Alto beach.

17 April 2015 in Anais da Academia Brasileira de Ciências
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JSJanine F. Silva
Janine F. Silva
Paula Braga GomesPaula Braga Gomes
Paula Braga Gomes
ESErika C. Santana
Erika C. Santana
JSJoão M. Silva
João M. Silva
ÉLÉrica P. Lima
Érica P. Lima
CPCARLOS DANIEL PEREZ
CARLOS DANIEL PEREZ
In Brazilian reefs, zoanthids, especially Palythoa caribaeorum are fundamental for structuring the local benthic community. The objective of this study was to determine the growth rate of P. caribaeorum, and to assess the influence of the site (different beaches), season (dry and wet), location (intertidal or infralittoral zones), and human pressure associated with tourism. For one year we monitored the cover of P. caribaeorum in transects and focused on 20 colonies. We cut off a square (100 cm2) from the central part of the colony and monitored the bare area for four months in each season. The average growth rates varied from 0.015 and 0.021 cm.day-1. The rate was homogeneous in all localities, and there was no influence from colony site, location, or touristic visitation, showing that the growth velocity may be an intrinsic characteristic of the species, with a strong genetic component. The growth rate of P. caribaeorum differed among months, and peaked in the first month after injury. The average cover varied from 6.2 to 22.9% and was lower on the reef visited by tourists. The present study corroborates the hypothesis that P. caribaeorum is important for coastal reef dynamics due to its fast and continuous growth.