Sandipan Das

Mr. Sandipan Das

Department of Life Science and Bioinformatics, Assam University, Silchar, Assam, International
orcid
Working on Reproductive Biology

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 November 2024 in Cells
Verified
Journal Article
Open access
PDF file
Sulagna DuttaSulagna Dutta
Sulagna Dutta
Pallav SenguptaPallav Sengupta
Pallav Sengupta
FMFilomena Mottola
Filomena Mottola
Sandipan DasSandipan Das
Sandipan Das
AHArif Hussain
Arif Hussain
Shubhadeep RoychoudhuryShubhadeep Roychoudhury
Shubhadeep Roychoudhury
The correlation between epigenetic alterations and the pathophysiology of human infertility is progressively being elucidated with the discovery of an increasing number of target genes that exhibit altered expression patterns linked to reproductive abnormalities. Several genes and molecules are emerging as important for the future management of human infertility. In men, microRNAs (miRNAs) like miR-34c, miR-34b, and miR-122 regulate apoptosis, sperm production, and germ cell survival, while other factors, such as miR-449 and sirtuin 1 (SIRT1), influence testicular health, oxidative stress, and mitochondrial function. In women, miR-100-5p, miR-483-5p, and miR-486-5p are linked to ovarian reserve, PCOS, and conditions like endometriosis. Mechanisms such as DNA methylation, histone modification, chromatin restructuring, and the influence of these non-coding RNA (ncRNA) molecules have been identified as potential perturbators of normal spermatogenesis and oogenesis processes. In fact, alteration of these key regulators of epigenetic processes can lead to reproductive disorders such as defective spermatogenesis, failure of oocyte maturation and embryonic development alteration. One of the primary factors contributing to changes in the key epigenetic regulators appear to be oxidative stress, which arises from environmental exposure to toxic substances or unhealthy lifestyle choices. This evidence-based study, retracing the major epigenetic processes, aims to identify and discuss the main epigenetic biomarkers of male and female fertility associated with an oxidative imbalance, providing future perspectives in the diagnosis and management of infertile couples.

18 October 2022 in Molecules
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Journal Article
Open access
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Shubhadeep RoychoudhuryShubhadeep Roychoudhury
Shubhadeep Roychoudhury
DDDipika Das
Dipika Das
Sandipan DasSandipan Das
Sandipan Das
Niraj Kumar JhaNiraj Kumar Jha
Niraj Kumar Jha
MPMahadeb Pal
Mahadeb Pal
PSPetr Slama
Petr Slama
Herbal products have been used in traditional systems of medicine and by ethnic healers for ages to treat various diseases. Currently, it is estimated that about 80% of people worldwide use herbal traditional medicines against various ailments, partly due to easy accessibility and low cost, and the lower side effects they pose. Bergenia ligulata, a herb ranging from the Himalayas to the foothills, including the north-eastern states of India, has traditionally been used as a remedy against various diseases, most prominently kidney stones. The medicinal properties of B. ligulata have been attributed to bergenin, its most potent bioactive component. Apart from bergenin, the other compounds available in B. ligulata are arbutin, gallic acid, protocatechuic acid, chlorogenic acid, syringic acid, catechin, ferulic acid, afzelechin, paashaanolactone, caryophyllene, 1,8-cineole, β-eudesmol, stigmasterol, β-sitosterol, parasorbic acid, 3-methyl-2-buten-1-ol, phytol, terpinen-4-ol, tannic acid, isovalaric acid, avicularin, quercetin, reynoutrin, and sitoinoside I. This review summarizes various medicinal properties of the herb, along with providing deep insight into its bioactive molecules and their potential roles in the amelioration of human ailments. Additionally, the possible mechanism(s) of action of the herb’s anti-urolithiatic, antioxidative, antipyretic, anti-diabetic, anti-inflammatory and hepatoprotective properties are discussed. This comprehensive documentation will help researchers to better understand the medicinal uses of the herb. Further studies on B. ligulata can lead to the discovery of new drug(s) and therapeutics for various ailments.

1 June 2022
Verified
Book Chapter
Closed access
PDF file
Sandipan DasSandipan Das
Sandipan Das
SRShatabhisha Roychoudhury
Shatabhisha Roychoudhury
AAAshok Agarwal
Ashok Agarwal
RHRalf Henkel
Ralf Henkel

1 June 2022
Verified
Book Chapter
Closed access
PDF file
Sandipan DasSandipan Das
Sandipan Das
ADAnwesha Dey
Anwesha Dey
NJNiraj Kumar Jha
Niraj Kumar Jha
DKDhruv Kumar
Dhruv Kumar
Shubhadeep RoychoudhuryShubhadeep Roychoudhury
Shubhadeep Roychoudhury
KKKavindra Kumar Kesari
Kavindra Kumar Kesari

25 September 2022 in Genes
Verified
Journal Article
Open access
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SDSuchismita Das
Suchismita Das
PGPokhraj Guha
Pokhraj Guha
MNMonika Nath
Monika Nath
Sandipan DasSandipan Das
Sandipan Das
SSSurojit Sen
Surojit Sen
Shubhadeep RoychoudhuryShubhadeep Roychoudhury
Shubhadeep Roychoudhury
Male infertility is a global public health concern. Teratozoospermia is a qualitative anomaly of spermatozoa morphology, contributing significantly to male infertility, whereas azoospermia is the complete absence of spermatozoa in the ejaculate. Thus, there is a serious need for unveiling the common origin and/or connection between both of these diseases, if any. This study aims to identify common potential biomarker genes of these two diseases via an in silico approach using a meta-analysis of microarray data. In this study, a differential expression analysis of genes was performed on four publicly available RNA microarray datasets, two each from teratozoospermia (GSE6872 and GSE6967) and azoospermia (GSE145467 and GSE25518). From the analysis, 118 DEGs were found to be common to teratozoospermia and azoospermia, and, interestingly, sperm autoantigenic protein 17 (SPA17) was found to possess the highest fold change value among all the DEGs (9.471), while coiled-coil domain-containing 90B (CCDC90B) and coiled-coil domain-containing 91 (CCDC91) genes were found to be common among three of analyses, i.e., Network Analyst, ExAtlas, and GEO2R. This observation indicates that SPA17, CCDC90B, and CCDC91 genes might have significant roles to play as potential biomarkers for teratozoospermia and azoospermia. Thus, our study opens a new window of research in this area and can provide an important theoretical basis for the diagnosis and treatment of both these diseases.

15 April 2025 in Antioxidants
Verified
Journal Article
Open access
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Sandipan DasSandipan Das
Sandipan Das
TDTanushree Deb
Tanushree Deb
FMFilomena Mottola
Filomena Mottola
NMNithar Ranjan Madhu
Nithar Ranjan Madhu
RYRevanaiah Yogisharadhya
Revanaiah Yogisharadhya
Shubhadeep RoychoudhuryShubhadeep Roychoudhury
Shubhadeep Roychoudhury
Abroma augustum (L.) L. f. is characterized by its fibrous structure, spiny trichomes, and distinctive leaf formations, which collectively contribute to its unique morphology and potential medicinal applications. This study aims to investigate the phytochemical constituents and elucidate the pharmacognostic and physicochemical characteristics of the stem bark powder, including evaluation of its antioxidant capacity and hepatoprotective effects against carbon tetrachloride (CCl4)-induced hepatotoxicity in both in vitro and ex vivo experimental models. Comprehensive phytochemical screening identified 50 distinct phytochemicals, including a range of alkaloids, flavonoids, terpenes, phenolics, and coumarins, among others. The extract displayed substantial solubility, with total phenolic and flavonoid content quantified as 12.32 ± 0.01 mg/g and 42.14 ± 3.5 mg/g, respectively. The antioxidant activity revealed IC50 values obtained from 2,2-diphenyl-1-picrylhydrazyl (DPPH), ferric reducing antioxidant power (FRAP), and 2,2′-azinobis-(3-ethylbenzothiazoline-6-sulfonic) acid (ABTS), measured at 214.007 µg/mL, 132.307 µg/mL, and 45.455 µg/mL, respectively. Additionally, the methanolic extract exhibited significant hepatoprotective properties, with observable reductions in lipid peroxidation and decreased concentrations of liver damage biomarkers (ALT, AST, and LDH) in both HepG2 cells and goat liver homogenate. Future investigations are warranted to elucidate the underlying mechanisms of these effects, including histopathological examinations and biochemical assays, followed by the administration of plant methanolic extracts.