Accurate, detailed, and up-to-date tree species distribution information is essential for effective forest management and environmental research. However, existing tree species maps face limitations in resolution and update cycle, making it difficult to meet modern demands. To overcome these limitations, this study proposes a novel framework that utilizes existing medium-resolution national tree species maps as ‘weak labels’ and fuses multi-temporal Sentinel-2 and PlanetScope satellite imagery data. Specifically, a super-resolution (SR) technique, using PlanetScope imagery as a reference, was first applied to Sentinel-2 data to enhance its resolution to 2.5 m. Then, these enhanced Sentinel-2 bands were combined with PlanetScope bands to construct the final multi-spectral, multi-temporal input data. Deep learning (DL) model training data was constructed by strategically sampling information-rich pixels from the national tree species map. Applying the proposed methodology to Sobaeksan and Jirisan National Parks in South Korea, the performance of various machine learning (ML) and deep learning (DL) models was compared, including traditional ML (linear regression, random forest) and DL architectures (multilayer perceptron (MLP), spectral encoder block (SEB)—linear, and SEB-transformer). The MLP model demonstrated optimal performance, achieving over 85% overall accuracy (OA) and more than 81% accuracy in classifying spectrally similar and difficult-to-distinguish species, specifically Quercus mongolica (QM) and Quercus variabilis (QV). Furthermore, while spectral and temporal information were confirmed to contribute significantly to tree species classification, the contribution of spatial (texture) information was experimentally found to be limited at the 2.5 m resolution level. This study presents a practical method for creating high-resolution tree species maps scalable to the national level by fusing existing tree species maps with Sentinel-2 and PlanetScope imagery without requiring costly separate field surveys. Its significance lies in establishing a foundation that can contribute to various fields such as forest resource management, biodiversity conservation, and climate change research.