Antreas Afantitis

Dr. Antreas Afantitis

NovaMechanics Ltd
orcid
Managing Director NovaMechanics, Scientific Director Entelos...

Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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Verified
Journal Article
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VMVarnavas Mouchlis
Varnavas Mouchlis
Antreas AfantitisAntreas Afantitis
Antreas Afantitis
ASAngela Serra
Angela Serra
MFMichele Fratello
Michele Fratello
APAnastasios Papadiamantis
Anastasios Papadiamantis
GMGeorgia Melagraki
Georgia Melagraki
De novo drug design is a computational approach that generates novel molecular structures from atomic building blocks with no a priori relationships. Conventional methods include structure-based and ligand-based design, which depend on the properties of the active site of a biological target or its known active binders, respectively. Artificial intelligence, including ma-chine learning, is an emerging field that has positively impacted the drug discovery process. Deep reinforcement learning is a subdivision of machine learning that combines artificial neural networks with reinforcement-learning architectures. This method has successfully been em-ployed to develop novel de novo drug design approaches using a variety of artificial networks including recurrent neural networks, convolutional neural networks, generative adversarial networks, and autoencoders. This review article summarizes advances in de novo drug design, from conventional growth algorithms to advanced machine-learning methodologies and high-lights hot topics for further development.

1 July 2009 in European Journal of Medicinal Chemistry
Verified
Journal Article
Closed access
GMGeorgia Melagraki
Georgia Melagraki
Antreas AfantitisAntreas Afantitis
Antreas Afantitis
OIOlga Igglessi-Markopoulou
Olga Igglessi-Markopoulou
Anastasia DetsiAnastasia Detsi
Anastasia Detsi
MKMaria Koufaki
Maria Koufaki
DHDimitra J. Hadjipavlou-Litina
Dimitra J. Hadjipavlou-Litina

1 January 2020 in Computational and Structural Biotechnology Journal
Verified
Journal Article
Open access
Antreas AfantitisAntreas Afantitis
Antreas Afantitis
GMGeorgia Melagraki
Georgia Melagraki
Panagiotis IsigonisPanagiotis Isigonis
Panagiotis Isigonis
ATAndreas Tsoumanis
Andreas Tsoumanis
DVDimitra-Danai Varsou
Dimitra-Danai Varsou
Iseult LynchIseult Lynch
Iseult Lynch
Nanotechnology has enabled the discovery of a multitude of novel materials exhibiting unique physicochemical (PChem) properties compared to their bulk analogues. These properties have led to a rapidly increasing range of commercial applications; this, however, may come at a cost, if an association to long-term health and environmental risks is discovered or even just perceived. Many nanomaterials (NMs) have not yet had their potential adverse biological effects fully assessed, due to costs and time constraints associated with the experimental assessment, frequently involving animals. Here, the available NM libraries are analyzed for their suitability for integration with novel nanoinformatics approaches and for the development of NM specific Integrated Approaches to Testing and Assessment (IATA) for human and environmental risk assessment, all within the NanoSolveIT cloud-platform. These established and well-characterized NM libraries (e.g. NanoMILE, NanoSolutions, NANoREG, NanoFASE, caLIBRAte, NanoTEST and the Nanomaterial Registry (>2000 NMs)) contain physicochemical characterization data as well as data for several relevant biological endpoints, assessed in part using harmonized Organisation for Economic Co-operation and Development (OECD) methods and test guidelines. Integration of such extensive NM information sources with the latest nanoinformatics methods will allow NanoSolveIT to model the relationships between NM structure (morphology), properties and their adverse effects and to predict the effects of other NMs for which less data is available. The project specifically addresses the needs of regulatory agencies and industry to effectively and rapidly evaluate the exposure, NM hazard and risk from nanomaterials and nano-enabled products, enabling implementation of computational 'safe-by-design' approaches to facilitate NM commercialization.

31 August 2010 in Journal of Cheminformatics
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Journal Article
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BHBarry Hardy
Barry Hardy
NDNicki Douglas
Nicki Douglas
CHChristoph Helma
Christoph Helma
MRMicha Rautenberg
Micha Rautenberg
Nina JeliazkovaNina Jeliazkova
Nina Jeliazkova
SESylvia Escher
Sylvia Escher
OpenTox provides an interoperable, standards-based Framework for the support of predictive toxicology data management, algorithms, modelling, validation and reporting. It is relevant to satisfying the chemical safety assessment requirements of the REACH legislation as it supports access to experimental data, (Quantitative) Structure-Activity Relationship models, and toxicological information through an integrating platform that adheres to regulatory requirements and OECD validation principles. Initial research defined the essential components of the Framework including the approach to data access, schema and management, use of controlled vocabularies and ontologies, architecture, web service and communications protocols, and selection and integration of algorithms for predictive modelling. OpenTox provides end-user oriented tools to non-computational specialists, risk assessors, and toxicological experts in addition to Application Programming Interfaces (APIs) for developers of new applications. OpenTox actively supports public standards for data representation, interfaces, vocabularies and ontologies, Open Source approaches to core platform components, and community-based collaboration approaches, so as to progress system interoperability goals.

20 April 2007 in Journal of Medicinal Chemistry
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Journal Article
Closed access
Anastasia DetsiAnastasia Detsi
Anastasia Detsi
DBDionysia Bouloumbasi
Dionysia Bouloumbasi
KPKyriakos C. Prousis
Kyriakos C. Prousis
MKMaria Koufaki
Maria Koufaki
GAGiorgos Athanasellis
Giorgos Athanasellis
DHDimitra J. Hadjipavlou-Litina
Dimitra J. Hadjipavlou-Litina

18 August 2022 in Nature Nanotechnology
Verified
Journal Article
Closed access
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EWEwelina Wyrzykowska
Ewelina Wyrzykowska
Alicja MikołajczykAlicja Mikołajczyk
Alicja Mikołajczyk
Iseult LynchIseult Lynch
Iseult Lynch
Nina JeliazkovaNina Jeliazkova
Nina Jeliazkova
NKNikolay Kochev
Nikolay Kochev
Tomasz PuzynTomasz Puzyn
Tomasz Puzyn