Amanda de Oliveira Lopes

Dr. Amanda de Oliveira Lopes

Oswaldo Cruz Foundation, Rio de Janeiro, Brazil
orcid

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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ALAmanda de Oliveira Lopes
Amanda de Oliveira Lopes
PMPedro do Nascimento Marinho
Pedro do Nascimento Marinho
LDLetícia Souza d'Ambrosio
Letícia Souza d'Ambrosio
VPVanessa de Paula
Vanessa de Paula
Kaposi’s sarcoma-associated herpesvirus (KSHV), also known as human gammaherpesvirus 8 (HHV-8), contains oncogenes and proteins that modulate various cellular functions, including proliferation, differentiation, survival, and apoptosis, and is integral to KSHV infection and oncogenicity. In this review, we describe the most important KSHV genes [ORF 73 (LANA), ORF 72 (vCyclin), ORF 71 or ORFK13 (vFLIP), ORF 74 (vGPCR), ORF 16 (vBcl-2), ORF K2 (vIL-6), ORF K9 (vIRF 1)/ORF K10.5, ORF K10.6 (vIRF 3), ORF K1 (K1), ORF K15 (K15), and ORF 36 (vPK)] that have the potential to induce malignant phenotypic characteristics of Kaposi’s sarcoma. These oncogenes can be explored in prospective studies as future therapeutic targets of Kaposi’s sarcoma.

1 January 2020 in Virus Research
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ALAmanda de Oliveira Lopes
Amanda de Oliveira Lopes
NSNatália Spitz
Natália Spitz
KMKatrini Martinelli
Katrini Martinelli
APAnderson Vicente de Paula
Anderson Vicente de Paula
ATAna Luiza de Castro Conde Toscano
Ana Luiza de Castro Conde Toscano
VPVanessa de Paula
Vanessa de Paula

19 February 2025 in Viruses
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HPHeuder Gustavo Oliveira Paião
Heuder Gustavo Oliveira Paião
Antonio Charlys Da-CostaAntonio Charlys Da-Costa
Antonio Charlys Da-Costa
NFNoely Evangelista Ferreira
Noely Evangelista Ferreira
LHLayla Honorato
Layla Honorato
BSBianca M. dos Santos
Bianca M. dos Santos
MCMaria Cássia Jacintho Mendes Correa
Maria Cássia Jacintho Mendes Correa
Background: There is scarce information on Varicella–Zoster virus genetic variability in individuals with acute central nervous system infection in Brazil. The objective of this study was the molecular characterization of Varicella–Zoster virus isolates in cerebrospinal fluid from individuals with acute central nervous system infection. Methods: Cerebrospinal fluid samples were collected from individuals evaluated in emergency and community healthcare services in São Paulo, Brazil. Varicella–Zoster virus identification was performed using commercial platforms Biofire-FilmArray Meningitis/Encephalitis (BioMérieux, Craponne, France) and XGEN-UMLTI-N9® (Mobius Life, Pinhais, Brazil). Positive samples were further characterized as wild-type or vaccine-strain by a real-time polymerase chain reaction assay that targeted a single nucleotide polymorphism in open reading frame 62. We also estimated the mean genetic distance and phylogenetic reconstruction based on open reading frames 22, 38, 54, and 62 in relation to sequences of intercontinentally circulating Varicella–Zoster virus isolates. Results: Among the 600 cerebrospinal fluid samples, we identified Varicella–Zoster virus in 30 (5%) samples. None were positive for the vaccine-strain. Twelve samples were sequenced and phylogenetically classified into Clades 1 (41.7%), 2 (25%), 3 (8.3%), 5 (16.7%), or 6 (8%). Conclusion: Enhanced characterization of circulating Varicella–Zoster virus Clades in Brazil identified previously unreported Clades 2 and 6 as well as three other Clades disseminated intercontinentally. These findings reinforce the importance of Varicella–Zoster virus molecular surveillance in cerebrospinal fluid.

25 September 2015 in PLOS ONE
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ASAmanda Perse da Silva
Amanda Perse da Silva
ALAmanda de Oliveira Lopes
Amanda de Oliveira Lopes
YVYasmine Rangel Vieira
Yasmine Rangel Vieira
AAAdilson José de Almeida
Adilson José de Almeida
FSFernando Samuel Sion
Fernando Samuel Sion
VPVanessa de Paula
Vanessa de Paula
Herpes simplex virus type 1 (HSV-1) is a prevalent human pathogen that causes a variety of diseases, including an increased risk of developing more severe disease in HIV-infected individuals. In Brazil, there is no information about the molecular epidemiology of HSV-1 infection, especially in HIV-infected individuals. The aim of this study was to perform the genotypic characterization of HSV-1 among HIV-infected patients. A total of 214 serum samples from HIV-positive patients without HSV infection symptoms were enrolled in one of two reference hospitals for HIV infection managing in Rio de Janeiro. The gG and gI genes were analyzed by restriction fragment length polymorphism (RFLP) and full nucleotide sequencing of the US8 (1601 bp), UL44 (1996 bp), and UL23 (1244 bp) regions was performed. A total of 38.3% (82/214) and 32.7% (70/214) of the serum samples tested positive for gG and gI genes, respectively. RFLP analysis classified the HSV-1 as belonging to genotype A. Phylogenetic analysis of the Brazilian samples for the US8, UL44, and UL23 regions demonstrated that the nucleotide identity between Brazilian samples was higher than 97% for all genes. No acyclovir mutation was detected in the patients. The shedding of HSV in the serum samples from HIV-positive patients who were asymptomatic for HSV infection was detected in this work. This is the first report of molecular characterization of HSV-1 in Brazilian samples since there is no previous data available in the literature concerning the genotypic classification and stable distribution of Brazilian strains of HSV-1 in Rio de Janeiro, Brazil.

31 July 2023 in Cellular and Molecular Biology
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JRJéssica Vasques Raposo
Jéssica Vasques Raposo
LBLuciana Rodrigues Carvalho Barros
Luciana Rodrigues Carvalho Barros
LTLauana Ribas Torres
Lauana Ribas Torres
RPRafaela Barbosa da Silva Pinto
Rafaela Barbosa da Silva Pinto
ALAmanda de Oliveira Lopes
Amanda de Oliveira Lopes
VPVanessa de Paula
Vanessa de Paula
Simplexvirus humanalpha1 (HSV-1) affects approximately 67% of the worlds population. Here, we sought to use the CRISPR / Cas9 system with the UL39 target, essential for virus replication. The sgRNA sequence was inserted into the plasmid (PX459-UL39). Vero cells were transfected with PX459-UL39, and inhibition of viral replication was assessed 24 and 48 hours later using plaque assays and fluorescence and qPCR. Fluorescence analyses revealed the presence of anti-HSV-1 CRISPR/Cas9 within Vero cells, and qPCR showed that the viral load decreased by> 95% of cells transfected with anti-HSV-1 CRISPR / Cas 9. Our data demonstrate the usefulness of the PX459-UL39 to inhibit HSV-1 infection.