Francisco Amil-Ruiz

Dr. Francisco Amil-Ruiz

University of Córdoba, Córdoba, Andalusia, Spain
orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 November 2013 in Journal of Experimental Botany
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Journal Article
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Laura Medina-PucheLaura Medina-Puche
Laura Medina-Puche
GCGuadalupe Cumplido-Laso
Guadalupe Cumplido-Laso
FAFrancisco Amil-Ruiz
Francisco Amil-Ruiz
THThomas Hoffmann
Thomas Hoffmann
LRLudwig Ring
Ludwig Ring
RBRosario Blanco-Portales
Rosario Blanco-Portales
This work characterized the role of the R2R3-MYB10 transcription factor (TF) in strawberry fruit ripening. The expression of this TF takes place mainly in the fruit receptacle and is repressed by auxins and activated by abscisic acid (ABA), in parallel to the ripening process. Anthocyanin was not produced when FaMYB10 expression was transiently silenced in fruit receptacles. An increase in FaMYB10 expression was observed in water-stressed fruits, which was accompanied by an increase in both ABA and anthocyanin content. High-throughput transcriptomic analyses performed in fruits with downregulated FaMYB10 expression indicated that this TF regulates the expression of most of the Early-regulated Biosynthesis Genes (EBGs) and the Late-regulated Biosynthesis Genes (LBGs) genes involved in anthocyanin production in ripened fruit receptacles. Besides, the expression of FaMYB10 was not regulated by FaMYB1 and vice versa. Taken together, all these data clearly indicate that the Fragaria × ananassa MYB10 TF plays a general regulatory role in the flavonoid/phenylpropanoid pathway during the ripening of strawberry

7 October 2011 in Plant and Cell Physiology
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Journal Article
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FAFrancisco Amil-Ruiz
Francisco Amil-Ruiz
RBRosario Blanco-Portales
Rosario Blanco-Portales
JBJuan Muñoz Blanco
Juan Muñoz Blanco
JCJosé L Caballero
José L Caballero
Strawberry, a small fruit crop of great importance throughout the world, has been considered a model plant system for Rosaceae, and is susceptible to a large variety of phytopathogenic organisms. Most components and mechanisms of the strawberry defense network remain poorly understood. However, from current knowledge, it seems clear that the ability of a strawberry plant to respond efficiently to pathogens relies first on the physiological status of injured tissue (pre-formed mechanisms of defense) and secondly on the general ability to recognize and identify the invaders by surface plant receptors, followed by a broad range of induced mechanisms, which include cell wall reinforcement, production of reactive oxygen species, phytoalexin generation and pathogenesis-related protein accumulation. Dissection of these physiological responses at a molecular level will provide valuable information to improve future breeding strategies for new strawberry varieties and to engineer strawberry plants for durable and broad-spectrum disease resistance. In turn, this will lead to a reduction in use of chemicals and in environmental risks. Advances in the understanding of the molecular interplay between plant (mainly those considered model systems) and various classes of microbial pathogens have been made in the last two decades. However, major progress in the genetics and molecular biology of strawberry is still needed to uncover fully the way in which this elaborate plant innate immune system works. These fundamental insights will provide a conceptual framework for rational human intervention through new strawberry research approaches. In this review, we will provide a comprehensive overview and discuss recent advances in molecular research on strawberry defense mechanisms against pathogens.

21 May 2009 in Journal of Experimental Botany
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SESonia Encinas-Villarejo
Sonia Encinas-Villarejo
AFAntonio Fernandez
Antonio Fernandez
FAFrancisco Amil-Ruiz
Francisco Amil-Ruiz
BSBerta de Los Santos
Berta de Los Santos
FRFernando Romero
Fernando Romero
JCJosé L Caballero
José L Caballero
Knowledge of the molecular basis of plant resistance to pathogens in species other than Arabidopsis is limited. The function of Fa WRKY1, the first WRKY gene isolated from strawberry (Fragaria×ananassa), an important agronomical fruit crop, has been investigated here. Fa WRKY1 encodes a IIc WRKY transcription factor and is up-regulated in strawberry following Colletotrichum acutatum infection, treatments with elicitors, and wounding. Its Arabidopsis sequence homologue, At WRKY75, has been described as playing a role in regulating phosphate starvation responses. However, using T-DNA insertion mutants, a role for the At WRKY75 and Fa WRKY1 in the activation of basal and R-mediated resistance in Arabidopsis is demonstrated. At wrky75 mutants are more susceptible to virulent and avirulent isolates of Pseudomonas syringae. Overexpression of Fa WRKY1 in At wrky75 mutant and wild type reverts the enhanced susceptible phenotype of the mutant, and even increases resistance to avirulent strains of P. syringae. The resistance phenotype is uncoupled to PATHOGENESIS-RELATED (PR) gene expression, but it is associated with a strong oxidative burst and glutathione-S-transferase (GST) induction. Taken together, these results indicate that At WRKY75 and Fa WRKY1 act as positive regulators of defence during compatible and incompatible interactions in Arabidopsis and, very likely, Fa WRKY1 is an important element mediating defence responses to C. acutatum in strawberry. Moreover, these results provide evidence that Arabidopsis can be a useful model for functional studies in Rosacea species like strawberry.

5 August 2013 in PLOS ONE
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Journal Article
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FAFrancisco Amil-Ruiz
Francisco Amil-Ruiz
JGJosé Garrido-Gala
José Garrido-Gala
RBRosario Blanco-Portales
Rosario Blanco-Portales
KFKevin M. Folta
Kevin M. Folta
JBJuan Muñoz Blanco
Juan Muñoz Blanco
JCJosé L Caballero
José L Caballero
Strawberry (Fragaria spp) is an emerging model for the development of basic genomics and recombinant DNA studies among rosaceous crops. Functional genomic and molecular studies involve relative quantification of gene expression under experimental conditions of interest. Accuracy and reliability are dependent upon the choice of an optimal reference control transcript. There is no information available on validated endogenous reference genes for use in studies testing strawberry-pathogen interactions. Thirteen potential pre-selected strawberry reference genes were tested against different tissues, strawberry cultivars, biotic stresses, ripening and senescent conditions, and SA/JA treatments. Evaluation of reference candidate’s suitability was analyzed by five different methodologies, and information was merged to identify best reference transcripts. A combination of all five methods was used for selective classification of reference genes. The resulting superior reference genes, FaRIB413, FaACTIN, FaEF1α and FaGAPDH2 are strongly recommended as control genes for relative quantification of gene expression in strawberry. This report constitutes the first systematic study to identify and validate optimal reference genes for accurate normalization of gene expression in strawberry plant defense response studies.

10 November 2006 in Physiologia Plantarum
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ADAntonio Casado Díaz
Antonio Casado Díaz
SESonia Encinas‐Villarejo
Sonia Encinas‐Villarejo
BSBerta de Los Santos
Berta de Los Santos
ESElisabetta Schilirò
Elisabetta Schilirò
EYElena Yubero-Serrano
Elena Yubero-Serrano
JCJosé L Caballero
José L Caballero
Important losses in strawberry production are caused by species of the fungus Colletotrichum, the causal agent of anthracnose. However, very limited studies at molecular level exist of the mechanisms related to strawberry susceptibility against this pathogen. We have analysed a moderately resistant cultivar (cv. Andana) together with a very susceptible one (cv. Camarosa) during the process of infection with Colletotrichum acutatum at a molecular level. To gain insight into this interaction we have identified a large number of strawberry genes involved in signalling, transcriptional control, defence and many genes with unknown function with altered expression in response to C. acutatum infection. Spatial and temporal gene expression profiles after infection showed that the response was dependant on the tissue and cultivar analysed and also quicker and/or stronger in the moderately resistant cultivar (cv. Andana) than in the susceptible one (cv. Camarosa). Interestingly, we found that genes described as being induced during pathogen infection such as γ‐thionins, peroxidases, chitinases and β‐1‐3‐glucanases were downregulated in fruit and/or crown tissues of the very susceptible cultivar. Our results yielded a first insight on some of the genes responding to this plant–pathogen interaction at molecular level and suggest that pathogen progression can be dependent upon a reduction of the active defences of strawberry and this is genotype and tissue dependent.

1 October 2019 in Food Chemistry
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Journal Article
Closed access
JIJuan J. Izquierdo-González
Juan J. Izquierdo-González
FAFrancisco Amil-Ruiz
Francisco Amil-Ruiz
SZSabina Zazzu
Sabina Zazzu
RSRosa Sánchez-Lucas
Rosa Sánchez-Lucas
CFCarlos Fuentes
Carlos Fuentes
Manuel J. Rodríguez-OrtegaManuel J. Rodríguez-Ortega
Manuel J. Rodríguez-Ortega