Fernando Nogueira

Fernando Nogueira

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Fernando Nogueira

CFísUC, Department of Physics, University of Coimbra, Rua Larga, 3004-516 Coimbra, Portugal

Research Focus & Metrics

Academic Career Length

35Years (1992-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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20 February 2015 in Physical Chemistry Chemical Physics
Verified
Journal Article
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XAXavier Andrade
Xavier Andrade
DSDavid Strubbe
David Strubbe
UGUmberto De Giovannini
Umberto De Giovannini
ALAsk Hjorth Larsen
Ask Hjorth Larsen
MOMicael J. T. Oliveira
Micael J. T. Oliveira
ARAngel Rubio
Angel Rubio
We explore how strategies to simulate various phenomena of electronic systems have been implemented in the Octopus code, using the versatility and performance of real-space grids.

4 May 2012 in Journal of Physics: Condensed Matter
Verified
Journal Article
Closed access
XAXavier Andrade
Xavier Andrade
JAJoseba Alberdi-Rodriguez
Joseba Alberdi-Rodriguez
DSDavid A Strubbe
David A Strubbe
MOMicael J T Oliveira
Micael J T Oliveira
FNFernando Nogueira
Fernando Nogueira
MMMiguel A L Marques
Miguel A L Marques
Octopus is a general-purpose density-functional theory (DFT) code, with a particular emphasis on the time-dependent version of DFT (TDDFT). In this paper we present the ongoing efforts to achieve the parallelization of octopus. We focus on the real-time variant of TDDFT, where the time-dependent Kohn-Sham equations are directly propagated in time. This approach has great potential for execution in massively parallel systems such as modern supercomputers with thousands of processors and graphics processing units (GPUs). For harvesting the potential of conventional supercomputers, the main strategy is a multi-level parallelization scheme that combines the inherent scalability of real-time TDDFT with a real-space grid domain-partitioning approach. A scalable Poisson solver is critical for the efficiency of this scheme. For GPUs, we show how using blocks of Kohn-Sham states provides the required level of data parallelism and that this strategy is also applicable for code optimization on standard processors. Our results show that real-time TDDFT, as implemented in octopus, can be the method of choice for studying the excited states of large molecular systems in modern parallel architectures.


7 March 2017 in Scientific Reports
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JSJingming Shi
Jingming Shi
TCTiago F. T. Cerqueira
Tiago F. T. Cerqueira
WCWenwen Cui
Wenwen Cui
FNFernando Nogueira
Fernando Nogueira
SBSilvana Botti
Silvana Botti
MMMiguel A. L. Marques
Miguel A. L. Marques
Delafossite crystals are fascinating ternary oxides that have demonstrated transparent conductivity and ambipolar doping. Here we use a high-throughput approach based on density functional theory to find delafossite and related layered phases of composition ABX2, where A and B are elements of the periodic table, and X is a chalcogen (O, S, Se, and Te). From the 15 624 compounds studied in the trigonal delafossite prototype structure, 285 are within 50 meV/atom from the convex hull of stability. These compounds are further investigated using global structural prediction methods to obtain their lowest-energy crystal structure. We find 79 systems not present in the materials project database that are thermodynamically stable and crystallize in the delafossite or in closely related structures. These novel phases are then characterized by calculating their band gaps and hole effective masses. This characterization unveils a large diversity of properties, ranging from normal metals, magnetic metals, and some candidate compounds for p-type transparent electrodes.

17 July 2015 in Physical Chemistry Chemical Physics
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JJJoaquim Jornet-Somoza
Joaquim Jornet-Somoza
JAJoseba Alberdi-Rodriguez
Joseba Alberdi-Rodriguez
BMBruce Milne
Bruce Milne
XAXavier Andrade
Xavier Andrade
MMMiguel A. L. Marques
Miguel A. L. Marques
ARAngel Rubio
Angel Rubio
First-principles calculations show that chlorophyll absorption spectra are different when located on the stromal and lumenal sides of the thylakoid membrane in the major light-harvesting complex from green plants.

17 April 2013 in Journal of the American Chemical Society
Verified
Journal Article
Closed access
KSKristian Støchkel
Kristian Støchkel
CHChristian Nygaard Hansen
Christian Nygaard Hansen
JHJørgen Houmøller
Jørgen Houmøller
LNLisbeth Munksgaard Nielsen
Lisbeth Munksgaard Nielsen
KAKelvin Anggara
Kelvin Anggara
BMBruce Milne
Bruce Milne