Patrick Aldrin-Kirk

Patrick Aldrin-Kirk

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Patrick Aldrin-Kirk

Molecular Neuromodulation, Wallenberg Neuroscience Center, Lund University

Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 October 2014 in Acta Neuropathologica
Verified
Journal Article
Closed access
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SHStaffan Holmqvist
Staffan Holmqvist
OCOldriska Chutna
Oldriska Chutna
LBLuc Bousset
Luc Bousset
PAPatrick Aldrin-Kirk
Patrick Aldrin-Kirk
WLWen Li
Wen Li
JLJia-Yi Li
Jia-Yi Li

5 May 2016 in Neuron
Verified
Journal Article
Open access
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PAPatrick Aldrin-Kirk
Patrick Aldrin-Kirk
AHAndreas Heuer
Andreas Heuer
GWGang Wang
Gang Wang
BMBengt Mattsson
Bengt Mattsson
MLMartin Lundblad
Martin Lundblad
TBTomas Björklund
Tomas Björklund
• Bimodal DREADDs and transgenic rats enable remote control of transplant function • Gs-coupled increase of cAMP using DREADDs leads to graft-induced dyskinesias (GIDs) • Serotonin 5-HT6 receptor stimulation gives GIDs through dysplastic DA release • DA neurons grafted to the human brain have high levels of the 5-HT6 receptor

7 July 2014 in PLOS ONE
Verified
Journal Article
Open access
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PAPatrick Aldrin-Kirk
Patrick Aldrin-Kirk
MDMarcus Davidsson
Marcus Davidsson
SHStaffan Holmqvist
Staffan Holmqvist
JLJia-Yi Li
Jia-Yi Li
TBTomas Björklund
Tomas Björklund
Synucleinopathies, characterized by intracellular aggregation of α-synuclein protein, share a number of features in pathology and disease progression. However, the vulnerable cell population differs significantly between the disorders, despite being caused by the same protein. While the vulnerability of dopamine cells in the substantia nigra to α-synuclein over-expression, and its link to Parkinson's disease, is well studied, animal models recapitulating the cortical degeneration in dementia with Lewy-bodies (DLB) are much less mature. The aim of this study was to develop a first rat model of widespread progressive synucleinopathy throughout the forebrain using adeno-associated viral (AAV) vector mediated gene delivery. Through bilateral injection of an AAV6 vector expressing human wild-type α-synuclein into the forebrain of neonatal rats, we were able to achieve widespread, robust α-synuclein expression with preferential expression in the frontal cortex. These animals displayed a progressive emergence of hyper-locomotion and dysregulated response to the dopaminergic agonist apomorphine. The animals receiving the α-synuclein vector displayed significant α-synuclein pathology including intra-cellular inclusion bodies, axonal pathology and elevated levels of phosphorylated α-synuclein, accompanied by significant loss of cortical neurons and a progressive reduction in both cortical and striatal ChAT positive interneurons. Furthermore, we found evidence of α-synuclein sequestered by IBA-1 positive microglia, which was coupled with a distinct change in morphology. In areas of most prominent pathology, the total α-synuclein levels were increased to, on average, two-fold, which is similar to the levels observed in patients with SNCA gene triplication, associated with cortical Lewy body pathology. This study provides a novel rat model of progressive cortical synucleinopathy, showing for the first time that cholinergic interneurons are vulnerable to α-synuclein over-expression. This animal model provides a powerful new tool for studies of neuronal degeneration in conditions of widespread cortical α-synuclein pathology, such as DLB, as well an attractive model for the exploration of novel biomarkers.

31 January 2018 in RNA
Verified
Journal Article
Open access
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MDMarcus Davidsson
Marcus Davidsson
PDPaula Díaz-Fernández
Paula Díaz-Fernández
MTMarcos Torroba
Marcos Torroba
OSOliver D. Schwich
Oliver D. Schwich
PAPatrick Aldrin-Kirk
Patrick Aldrin-Kirk
TBTomas Björklund
Tomas Björklund
Genome editing has proven to be highly potent in the generation of functional gene knockouts in dividing cells. In the CNS however, efficient technologies to repair sequences are yet to materialize. Reprogramming on the mRNA level is an attractive alternative as it provides means to perform in situ editing of coding sequences without nuclease dependency. Furthermore, de novo sequences can be inserted without the requirement of homologous recombination. Such reprogramming would enable efficient editing in quiescent cells (e.g., neurons) with an attractive safety profile for translational therapies. In this study, we applied a novel molecular-barcoded screening assay to investigate RNAtrans-splicing in mammalian neurons. Through three alternative screening systems in cell culture and in vivo, we demonstrate that factors determiningtrans-splicing are reproducible regardless of the screening system. With this screening, we have located the most permissivetrans-splicing sequences targeting an intron in the Synapsin I gene. Using viral vectors, we were able to splice full-length fluorophores into the mRNA while retaining very low off-target expression. Furthermore, this approach also showed evidence of functionality in the mouse striatum. However, in its current form, thetrans-splicing events are stochastic and the overall activity lower than would be required for therapies targeting loss-of-function mutations. Nevertheless, the herein described barcode-based screening assay provides a unique possibility to screen and map large libraries in single animals or cell assays with very high precision.

31 May 2018 in bioRxiv
Verified
Preprint
Open access
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MDMarcus Davidsson
Marcus Davidsson
GWGang Wang
Gang Wang
PAPatrick Aldrin-Kirk
Patrick Aldrin-Kirk
TCTiago Cardoso
Tiago Cardoso
SNSara Nolbrant
Sara Nolbrant
TBTomas Björklund
Tomas Björklund
Engineering of Adeno-associated viral (AAV) vector capsids through directed evolution has been used to generate novel capsids with altered tropism and function 1-9 . This approach, however, involves a selection process that requires multiple generations of screenings to identify real functional capsids 2-4 . Due to the random nature of this process, it is also inherently unreproducible, and the resulting capsid variants provide little mechanistic insights into the molecular targets engaged. To overcome this, we have developed a novel method for rational capsid evolution named Barcoded Rational AAV Vector Evolution (BRAVE). The key to this method is a novel viral production approach where each virus particle displays a protein-derived peptide on the surface which is linked to a unique barcode in the packaged genome 10 . Through hidden Markov model-based clustering 11 , we were able to identify novel consensus motifs for cell-type specific retrograde transport in neurons in vivo in the brain. The BRAVE approach enables the selection of novel capsid structures using only a single-generation screening. Furthermore, it can be used to map, with high resolution, the putative binding sequences of large protein libraries.

1 May 2016 in Molecular Therapy
Verified
Journal Article
Open access
MDMarcus Davidsson
Marcus Davidsson
GWGang Wang
Gang Wang
PAPatrick Aldrin-Kirk
Patrick Aldrin-Kirk
MHMorgan Hartnor
Morgan Hartnor
TBTomas Björklund
Tomas Björklund