Jiří Friml

Jiří Friml

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Jiří Friml

Department of Plant Systems Biology, Flanders Institute for Biotechnology, Technologiepark 927, 9052 Ghent, Belgium

Research Focus & Metrics

Academic Career Length

19Years (2008-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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18 November 2008 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Closed access
JKJürgen Kleine-Vehn
Jürgen Kleine-Vehn
JLJohannes Leitner
Johannes Leitner
MZMarta Zwiewka
Marta Zwiewka
MSMichael Sauer
Michael Sauer
LALindy Abas
Lindy Abas
JFJiří Friml
Jiří Friml
All eukaryotic cells present at the cell surface a specific set of plasma membrane proteins that modulate responses to internal and external cues and whose activity is also regulated by protein degradation. We characterized the lytic vacuole-dependent degradation of membrane proteins in Arabidopsis thaliana by means of in vivo visualization of vacuolar targeting combined with quantitative protein analysis. We show that the vacuolar targeting pathway is used by multiple cargos including PIN-FORMED (PIN) efflux carriers for the phytohormone auxin. In vivo visualization of PIN2 vacuolar targeting revealed its differential degradation in response to environmental signals, such as gravity. In contrast to polar PIN delivery to the basal plasma membrane, which depends on the vesicle trafficking regulator ARF-GEF GNOM, PIN sorting to the lytic vacuolar pathway requires additional brefeldin A-sensitive ARF-GEF activity. Furthermore, we identified putative retromer components SORTING NEXIN1 (SNX1) and VACUOLAR PROTEIN SORTING29 (VPS29) as important factors in this pathway and propose that the retromer complex acts to retrieve PIN proteins from a late/pre-vacuolar compartment back to the recycling pathways. Our data suggest that ARF GEF- and retromer-dependent processes regulate PIN sorting to the vacuole in an antagonistic manner and illustrate instrumentalization of this mechanism for fine-tuning the auxin fluxes during gravitropic response.

1 November 2008 in Annual Review of Cell and Developmental Biology
Verified
Journal Article
Closed access
JKJürgen Kleine-Vehn
Jürgen Kleine-Vehn
JFJiří Friml
Jiří Friml
Plant development is characterized by a profound phenotypic plasticity that often involves redefining of the developmental fate and polarity of cells within differentiated tissues. The plant hormone auxin and its directional intercellular transport play a major role in these processes because they provide positional information and link cell polarity with tissue patterning. This plant-specific mechanism of transport-dependent auxin gradients depends on subcellular dynamics of auxin transport components, in particular on endocytic recycling and polar targeting. Recent insights into these cellular processes in plants have revealed important parallels to yeast and animal systems, including clathrin-dependent endocytosis, retromer function, and transcytosis, but have also emphasized unique features of plant cells such as diversity of polar targeting pathways; integration of environmental signals into subcellular trafficking; and the link between endocytosis, cell polarity, and cell fate specification. We review these advances and focus on the translation of the subcellular dynamics to the regulation of whole-plant development.

15 October 2008 in Development
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Journal Article
Open access
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JMJozef Mravec
Jozef Mravec
MKMartin Kubeš
Martin Kubeš
ABAgnieszka Bielach
Agnieszka Bielach
VGVassilena Gaykova
Vassilena Gaykova
JPJan Petrášek
Jan Petrášek
JFJiří Friml
Jiří Friml
The signalling molecule auxin controls plant morphogenesis via its activity gradients, which are produced by intercellular auxin transport. Cellular auxin efflux is the rate-limiting step in this process and depends on PIN and phosphoglycoprotein (PGP) auxin transporters. Mutual roles for these proteins in auxin transport are unclear, as is the significance of their interactions for plant development. Here, we have analysed the importance of the functional interaction between PIN- and PGP-dependent auxin transport in development. We show by analysis of inducible overexpression lines that PINs and PGPs define distinct auxin transport mechanisms: both mediate auxin efflux but they play diverse developmental roles. Components of both systems are expressed during embryogenesis, organogenesis and tropisms, and they interact genetically in both synergistic and antagonistic fashions. A concerted action of PIN- and PGP-dependent efflux systems is required for asymmetric auxin distribution during these processes. We propose a model in which PGP-mediated efflux controls auxin levels in auxin channel-forming cells and, thus, auxin availability for PIN-dependent vectorial auxin movement.

18 March 2008 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Closed access
PDPankaj Dhonukshe
Pankaj Dhonukshe
IGIlya Grigoriev
Ilya Grigoriev
RFRainer Fischer
Rainer Fischer
MTMotoki Tominaga
Motoki Tominaga
DRDavid G. Robinson
David G. Robinson
JFJiří Friml
Jiří Friml
Many aspects of plant development, including patterning and tropisms, are largely dependent on the asymmetric distribution of the plant signaling molecule auxin. Auxin transport inhibitors (ATIs), which interfere with directional auxin transport, have been essential tools in formulating this concept. However, despite the use of ATIs in plant research for many decades, the mechanism of ATI action has remained largely elusive. Using real-time live-cell microscopy, we show here that prominent ATIs such as 2,3,5-triiodobenzoic acid (TIBA) and 2-(1-pyrenoyl) benzoic acid (PBA) inhibit vesicle trafficking in plant, yeast, and mammalian cells. Effects on micropinocytosis, rab5-labeled endosomal motility at the periphery of HeLa cells and on fibroblast mobility indicate that ATIs influence actin cytoskeleton. Visualization of actin cytoskeleton dynamics in plants, yeast, and mammalian cells show that ATIs stabilize actin. Conversely, stabilizing actin by chemical or genetic means interferes with endocytosis, vesicle motility, auxin transport, and plant development, including auxin transport-dependent processes. Our results show that a class of ATIs act as actin stabilizers and advocate that actin-dependent trafficking of auxin transport components participates in the mechanism of auxin transport. These studies also provide an example of how the common eukaryotic process of actin-based vesicle motility can fulfill a plant-specific physiological role.

26 October 2008 in Nature
Verified
Journal Article
Closed access
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PDPankaj Dhonukshe
Pankaj Dhonukshe
HTHirokazu Tanaka
Hirokazu Tanaka
TGTatsuaki Goh
Tatsuaki Goh
KEKazuo Ebine
Kazuo Ebine
AMAri Pekka Mähönen
Ari Pekka Mähönen
JFJiří Friml
Jiří Friml

1 August 2008 in Plant Physiology
Verified
Journal Article
Closed access
EFElena Feraru
Elena Feraru
JFJiří Friml
Jiří Friml