Saba Parvez

Saba Parvez

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Saba Parvez

Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York, USA

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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27 August 2018 in Chemical Reviews
Verified
Journal Article
Closed access
SPSaba Parvez
Saba Parvez
MLmarcus john curtis Long
marcus john curtis Long
JPJesse R. Poganik
Jesse R. Poganik
YAYimon Aye
Yimon Aye

21 June 2018 in Journal of the American Chemical Society
Verified
Journal Article
Closed access
JTJulian Tu
Julian Tu
MXMinghao Xu
Minghao Xu
SPSaba Parvez
Saba Parvez
RPRandall T. Peterson
Randall T. Peterson
Raphael FranziniRaphael Franzini
Raphael Franzini

3 September 2021 in Science
Verified
Journal Article
Closed access
SPSaba Parvez
Saba Parvez
CHChelsea Herdman
Chelsea Herdman
MBManu Beerens
Manu Beerens
KCKorak Chakraborti
Korak Chakraborti
ZHZachary P. Harmer
Zachary P. Harmer
RPRandall T. Peterson
Randall T. Peterson
Screen time for CRISPR: CRISPR-Cas9 has been used to edit the genomes of organisms ranging from fruit flies to primates, but it has not been used in large-scale genetic screens in animals because generating, validating, and keeping track of large numbers of mutant animals is prohibitively laborious. Parvez et al . have developed Multiplexed Intermixed CRISPR Droplets, or MIC-Drop, a platform combining droplet microfluidics, en masse CRISPR injections, and barcoding, to enable large-scale genetic screens. In pilot phenotypic screens in zebrafish, MIC-Drop enabled rapid identification of the target of a small molecule and discovery of several new genes governing cardiovascular development. MIC-Drop is potentially scalable to thousands of targets and adaptable to diverse organisms and experiments. —DJ

31 December 2014 in Journal of the American Chemical Society
Verified
Journal Article
Open access
SPSaba Parvez
Saba Parvez
YFYuan Fu
Yuan Fu
JLJiayang Li
Jiayang Li
MLmarcus john curtis Long
marcus john curtis Long
HLHong-Yu Lin
Hong-Yu Lin
YAYimon Aye
Yimon Aye
Lipid-derived electrophiles (LDEs) that can directly modify proteins have emerged as important small-molecule cues in cellular decision-making. However, because these diffusible LDEs can modify many targets [e.g., >700 cysteines are modified by the well-known LDE 4-hydroxynonenal (HNE)], establishing the functional consequences of LDE modification on individual targets remains devilishly difficult. Whether LDE modifications on a single protein are biologically sufficient to activate discrete redox signaling response downstream also remains untested. Herein, using T-REX (targetable reactive electrophiles and oxidants), an approach aimed at selectively flipping a single redox switch in cells at a precise time, we show that a modest level (∼34%) of HNEylation on a single target is sufficient to elicit the pharmaceutically important antioxidant response element (ARE) activation, and the resultant strength of ARE induction recapitulates that observed from whole-cell electrophilic perturbation. These data provide the first evidence that single-target LDE modifications are important individual events in mammalian physiology.

27 October 2016 in Nature Protocols
Verified
Journal Article
Closed access
PDF file
SPSaba Parvez
Saba Parvez
MLmarcus john curtis Long
marcus john curtis Long
HLHong-Yu Lin
Hong-Yu Lin
YZYi Zhao
Yi Zhao
JHJoseph A Haegele
Joseph A Haegele
YAYimon Aye
Yimon Aye

5 November 2019 in Chemical Science
Verified
Journal Article
Open access
PDF file
JTJulian Tu
Julian Tu
DSDennis Svatunek
Dennis Svatunek
SPSaba Parvez
Saba Parvez
HEHannah J. Eckvahl
Hannah J. Eckvahl
MXMinghao Xu
Minghao Xu
Raphael FranziniRaphael Franzini
Raphael Franzini
In vivo compatible reactions have a broad range of possible applications in chemical biology and the pharmaceutical sciences. Here we report tetrazines that can be removed by exposure to isonitriles under very mild conditions. Tetrazylmethyl derivatives are easily accessible protecting groups for amines and phenols. The isonitrile-induced removal is rapid and near-quantitative. Intriguingly, the deprotection is especially effective with (trimethylsilyl)methyl isocyanide, and serum albumin can catalyze the elimination under physiological conditions. NMR and computational studies revealed that an imine-tautomerization step is often rate limiting, and the unexpected cleavage of the Si–C bond accelerates this step in the case with (trimethylsilyl)methyl isocyanide. Tetrazylmethyl-removal is compatible with use on biomacromolecules, in cellular environments, and in living organisms as demonstrated by cytotoxicity experiments and fluorophore-release studies on proteins and in zebrafish embryos. By combining tetrazylmethyl derivatives with previously reported tetrazine-responsive 3-isocyanopropyl groups, it was possible to liberate two fluorophores in vertebrates from a single bioorthogonal reaction. This chemistry will open new opportunities towards applications involving multiplexed release schemes and is a valuable asset to the growing toolbox of bioorthogonal dissociative reactions.