Yuki Nagata

Yuki Nagata

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Yuki Nagata

Max Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany

Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 September 2020 in The Journal of Physical Chemistry Letters
Verified
Journal Article
Open access
TSTakakazu Seki
Takakazu Seki
KCKuo-Yang Chiang
Kuo-Yang Chiang
CYChun-Chieh Yu
Chun-Chieh Yu
XYXiaoqing Yu
Xiaoqing Yu
MOMasanari Okuno
Masanari Okuno
MBMischa Bonn
Mischa Bonn
Insights into the microscopic structure and dynamics of the water’s hydrogen-bonded network are crucial to understanding the role of water in biology, atmospheric and geochemical processes, and chemical reactions in aqueous systems. Vibrational spectroscopy of water has provided many such insights, in particular using the O-H stretch mode. In this Perspective, we summarize our recent studies that have revealed that the H-O-H bending mode can be an equally powerful reporter for the microscopic structure of water, and provides more direct access to the hydrogen-bonded network than the conventionally studied O-H stretch mode. We discuss the fundamental vibrational properties of the water bending mode, such as the intermolecular vibrational coupling, and its effects on the spectral lineshapes and vibrational dynamics. Several examples of static and ultrafast bending mode spectroscopy illustrate how the water bending mode provides an excellent window on the microscopic structure of both bulk and interfacial water.

20 April 2016 in Chemical Reviews
Verified
Journal Article
Closed access
FPFivos Perakis
Fivos Perakis
LMLuigi De Marco
Luigi De Marco
ASAndrey Shalit
Andrey Shalit
FTFujie Tang
Fujie Tang
ZKZachary R. Kann
Zachary R. Kann
YNYuki Nagata
Yuki Nagata

1 April 2016 in Science Advances
Verified
Journal Article
Open access
PDF file
RPRavindra Pandey
Ravindra Pandey
KUKota Usui
Kota Usui
RLRuth A. Livingstone
Ruth A. Livingstone
SFSean A. Fischer
Sean A. Fischer
JPJim Pfaendtner
Jim Pfaendtner
TWTobias Weidner
Tobias Weidner
Ice-nucleating organisms play important roles in the environment. With their ability to induce ice formation at temperatures just below the ice melting point, bacteria such as Pseudomonas syringae attack plants through frost damage using specialized ice-nucleating proteins. Besides the impact on agriculture and microbial ecology, airborne P. syringae can affect atmospheric glaciation processes, with consequences for cloud evolution, precipitation, and climate. Biogenic ice nucleation is also relevant for artificial snow production and for biomimetic materials for controlled interfacial freezing. We use interface-specific sum frequency generation (SFG) spectroscopy to show that hydrogen bonding at the water-bacteria contact imposes structural ordering on the adjacent water network. Experimental SFG data and molecular dynamics simulations demonstrate that ice-active sites within P. syringae feature unique hydrophilic-hydrophobic patterns to enhance ice nucleation. The freezing transition is further facilitated by the highly effective removal of latent heat from the nucleation site, as apparent from time-resolved SFG spectroscopy.

6 March 2020 in Chemical Reviews
Verified
Journal Article
Open access
FTFujie Tang
Fujie Tang
TOTatsuhiko Ohto
Tatsuhiko Ohto
SSShumei Sun
Shumei Sun
JRJérémy R. Rouxel
Jérémy R. Rouxel
SISho Imoto
Sho Imoto
YNYuki Nagata
Yuki Nagata
From a glass of water to glaciers in Antarctica, water–air and ice–air interfaces are abundant on Earth. Molecular-level structure and dynamics at these interfaces are key for understanding many chemical/physical/atmospheric processes including the slipperiness of ice surfaces, the surface tension of water, and evaporation/sublimation of water. Sum-frequency generation (SFG) spectroscopy is a powerful tool to probe the molecular-level structure of these interfaces because SFG can specifically probe the topmost interfacial water molecules separately from the bulk and is sensitive to molecular conformation. Nevertheless, experimental SFG has several limitations. For example, SFG cannot provide information on the depth of the interface and how the orientation of the molecules varies with distance from the surface. By combining the SFG spectroscopy with simulation techniques, one can directly compare the experimental data with the simulated SFG spectra, allowing us to unveil the molecular-level structure of water–air and ice–air interfaces. Here, we present an overview of the different simulation protocols available for SFG spectra calculations. We systematically compare the SFG spectra computed with different approaches, revealing the advantages and disadvantages of the different methods. Furthermore, we account for the findings through combined SFG experiments and simulations and provide future challenges for SFG experiments and simulations at different aqueous interfaces.

15 April 2015 in Angewandte Chemie International Edition
Verified
Journal Article
Closed access
PDF file
MBMischa Bonn
Mischa Bonn
YNYuki Nagata
Yuki Nagata
EBEllen H. G. Backus
Ellen H. G. Backus

15 April 2010 in Journal of the American Chemical Society
Verified
Journal Article
Closed access
YNYuki Nagata
Yuki Nagata
SMShaul Mukamel
Shaul Mukamel