Phil J. Bouchet

Phil J. Bouchet

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Phil J. Bouchet

University of Western Australia, Perth, WA, Australia

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 June 2020 in Ecography
Verified
Journal Article
Open access
PDF file
DZDamaris Zurell
Damaris Zurell
JFJanet Franklin
Janet Franklin
CKChristian König
Christian König
PBPhil J. Bouchet
Phil J. Bouchet
CDCarsten F. Dormann
Carsten F. Dormann
CMCory Merow
Cory Merow
Species distribution models (SDMs) constitute the most common class of models across ecology, evolution and conservation. The advent of ready‐to‐use software packages and increasing availability of digital geoinformation have considerably assisted the application of SDMs in the past decade, greatly enabling their broader use for informing conservation and management, and for quantifying impacts from global change. However, models must be fit for purpose, with all important aspects of their development and applications properly considered. Despite the widespread use of SDMs, standardisation and documentation of modelling protocols remain limited, which makes it hard to assess whether development steps are appropriate for end use. To address these issues, we propose a standard protocol for reporting SDMs, with an emphasis on describing how a study's objective is achieved through a series of modeling decisions. We call this the ODMAP (Overview, Data, Model, Assessment and Prediction) protocol, as its components reflect the main steps involved in building SDMs and other empirically‐based biodiversity models. The ODMAP protocol serves two main purposes. First, it provides a checklist for authors, detailing key steps for model building and analyses, and thus represents a quick guide and generic workflow for modern SDMs. Second, it introduces a structured format for documenting and communicating the models, ensuring transparency and reproducibility, facilitating peer review and expert evaluation of model quality, as well as meta‐analyses. We detail all elements of ODMAP, and explain how it can be used for different model objectives and applications, and how it complements efforts to store associated metadata and define modelling standards. We illustrate its utility by revisiting nine previously published case studies, and provide an interactive web‐based application to facilitate its use. We plan to advance ODMAP by encouraging its further refinement and adoption by the scientific community.

1 October 2018 in Trends in Ecology & Evolution
Verified
Journal Article
Open access
KYKatherine L. Yates
Katherine L. Yates
PBPhil J. Bouchet
Phil J. Bouchet
MCM. Julian Caley
M. Julian Caley
KMKerrie Mengersen
Kerrie Mengersen
CRChristophe F. Randin
Christophe F. Randin
ASAna M.M. Sequeira
Ana M.M. Sequeira
Predictive models are central to many scientific disciplines and vital for informing management in a rapidly changing world. However, limited understanding of the accuracy and precision of models transferred to novel conditions (their 'transferability') undermines confidence in their predictions. Here, 50 experts identified priority knowledge gaps which, if filled, will most improve model transfers. These are summarized into six technical and six fundamental challenges, which underlie the combined need to intensify research on the determinants of ecological predictability, including species traits and data quality, and develop best practices for transferring models. Of high importance is the identification of a widely applicable set of transferability metrics, with appropriate tools to quantify the sources and impacts of prediction uncertainty under novel conditions.

19 August 2020 in Methods in Ecology and Evolution
Verified
Journal Article
Open access
PDF file
TLTim Langlois
Tim Langlois
JGJordan Goetze
Jordan Goetze
TBTodd Bond
Todd Bond
JMJacquomo Monk
Jacquomo Monk
RARene A. Abesamis
Rene A. Abesamis
EHEuan S. Harvey
Euan S. Harvey
Baited remote underwater stereo‐video systems (stereo‐BRUVs) are a popular tool to sample demersal fish assemblages and gather data on their relative abundance and body size structure in a robust, cost‐effective and non‐invasive manner. Given the rapid uptake of the method, subtle differences have emerged in the way stereo‐BRUVs are deployed and how the resulting imagery is annotated. These disparities limit the interoperability of datasets obtained across studies, preventing broadscale insights into the dynamics of ecological systems. We provide the first globally accepted guide for using stereo‐BRUVs to survey demersal fish assemblages and associated benthic habitats. Information on stereo‐BRUVs design, camera settings, field operations and image annotation are outlined. Additionally, we provide links to protocols for data validation, archiving and sharing. Globally, the use of stereo‐BRUVs is spreading rapidly. We provide a standardized protocol that will reduce methodological variation among researchers and encourage the use of Findable, Accessible, Interoperable and Reusable workflows to increase the ability to synthesize global datasets and answer a broad suite of ecological questions.

6 March 2018 in Methods in Ecology and Evolution
Verified
Journal Article
Closed access
PDF file
ASAna M. M. Sequeira
Ana M. M. Sequeira
PBPhil J. Bouchet
Phil J. Bouchet
KYKatherine L. Yates
Katherine L. Yates
KMKerrie Mengersen
Kerrie Mengersen
MCM. Julian Caley
M. Julian Caley

18 February 2015 in Endangered Species Research
Verified
Journal Article
Open access
EPEcm Parsons
Ecm Parsons
SBS Baulch
S Baulch
TBT Bechshoft
T Bechshoft
GBG Bellazzi
G Bellazzi
PBP Bouchet
P Bouchet
WSWj Sutherland
Wj Sutherland

15 August 2014 in Biological Reviews
Verified
Journal Article
Closed access
PDF file
PBPhil J. Bouchet
Phil J. Bouchet
JMJessica J. Meeuwig
Jessica J. Meeuwig
CKChandra P. Salgado Kent
Chandra P. Salgado Kent
TLTom B. Letessier
Tom B. Letessier
CJCurt K. Jenner
Curt K. Jenner