Timothy J. Knowles

Timothy J. Knowles

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Timothy J. Knowles

School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK

Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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2 June 2016 in Nature Protocols
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Journal Article
Closed access
SLSarah C Lee
Sarah C Lee
TKTim J Knowles
Tim J Knowles
Vincent L. G. PostisVincent L. G. Postis
Vincent L. G. Postis
MJMohammed Jamshad
Mohammed Jamshad
RPRosemary A Parslow
Rosemary A Parslow
TDTimothy R Dafforn
Timothy R Dafforn

23 October 2014 in Nano Research
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Journal Article
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MJMohammed Jamshad
Mohammed Jamshad
VGVinciane Grimard
Vinciane Grimard
IIIlaria Idini
Ilaria Idini
TKTim J. Knowles
Tim J. Knowles
MDMiriam R. Dowle
Miriam R. Dowle
TDTim R. Dafforn
Tim R. Dafforn
In the past few years there has been a growth in the use of nanoparticles for stabilizing lipid membranes that contain embedded proteins. These bionanoparticles provide a solution to the challenging problem of membrane protein isolation by maintaining a lipid bilayer essential to protein integrity and activity. We have previously described the use of an amphipathic polymer (poly(styrene-co-maleic acid), SMA) to produce discoidal nanoparticles with a lipid bilayer core containing the embedded protein. However the structure of the nanoparticle itself has not yet been determined. This leaves a major gap in understanding how the SMA stabilizes the encapsulated bilayer and how the bilayer relates physically and structurally to an unencapsulated lipid bilayer. In this paper we address this issue by describing the structure of the SMA lipid particle (SMALP) using data from small angle neutron scattering (SANS), electron microscopy (EM), attenuated total reflection Fourier transform infrared spectroscopy (ATR-FTIR), differential scanning calorimetry (DSC) and nuclear magnetic resonance spectroscopy (NMR). We show that the particle is disc shaped containing a polymer “bracelet” encircling the lipid bilayer. The structure and orientation of the individual components within the bilayer and polymer are determined showing that styrene moieties within SMA intercalate between the lipid acyl chains. The dimensions of the encapsulated bilayer are also determined and match those measured for a natural membrane. Taken together, the description of the structure of the SMALP forms the foundation for future development and applications of SMALPs in membrane protein production and analysis.

25 November 2016 in Biochemical Journal
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KMKerrie A. Morrison
Kerrie A. Morrison
AAAneel Akram
Aneel Akram
AMAshlyn Mathews
Ashlyn Mathews
ZKZoeya A. Khan
Zoeya A. Khan
JPJaimin H. Patel
Jaimin H. Patel
Alice RothnieAlice Rothnie
Alice Rothnie
The use of styrene–maleic acid (SMA) copolymers to extract and purify transmembrane proteins, while retaining their native bilayer environment, overcomes many of the disadvantages associated with conventional detergent-based procedures. This approach has huge potential for the future of membrane protein structural and functional studies. In this investigation, we have systematically tested a range of commercially available SMA polymers, varying in both the ratio of styrene and maleic acid and in total size, for the ability to extract, purify and stabilise transmembrane proteins. Three different membrane proteins (BmrA, LeuT and ZipA), which vary in size and shape, were used. Our results show that several polymers, can be used to extract membrane proteins, comparably to conventional detergents. A styrene:maleic acid ratio of either 2:1 or 3:1, combined with a relatively small average molecular mass (7.5–10 kDa), is optimal for membrane extraction, and this appears to be independent of the protein size, shape or expression system. A subset of polymers were taken forward for purification, functional and stability tests. Following a one-step affinity purification, SMA 2000 was found to be the best choice for yield, purity and function. However, the other polymers offer subtle differences in size and sensitivity to divalent cations that may be useful for a variety of downstream applications.

24 June 2019 in Nature Microbiology
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GHGareth W. Hughes
Gareth W. Hughes
SHStephen C. L. Hall
Stephen C. L. Hall
CLClaire S. Laxton
Claire S. Laxton
PSPooja Sridhar
Pooja Sridhar
AMAmirul H. Mahadi
Amirul H. Mahadi
TKTimothy J. Knowles
Timothy J. Knowles

15 June 2022 in Nature
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GMGideon Mamou
Gideon Mamou
FCFederico Corona
Federico Corona
RCRuth Cohen-Khait
Ruth Cohen-Khait
NHNicholas G. Housden
Nicholas G. Housden
VYVivian Yeung
Vivian Yeung
WVWaldemar Vollmer
Waldemar Vollmer
Linkages between the outer membrane of Gram-negative bacteria and the peptidoglycan layer are crucial for the maintenance of cellular integrity and enable survival in challenging environments1–5. The function of the outer membrane is dependent on outer membrane proteins (OMPs), which are inserted into the membrane by the β-barrel assembly machine6,7 (BAM). Growing Escherichia coli cells segregate old OMPs towards the poles by a process known as binary partitioning, the basis of which is unknown8. Here we demonstrate that peptidoglycan underpins the spatiotemporal organization of OMPs. Mature, tetrapeptide-rich peptidoglycan binds to BAM components and suppresses OMP foldase activity. Nascent peptidoglycan, which is enriched in pentapeptides and concentrated at septa9, associates with BAM poorly and has little effect on its activity, leading to preferential insertion of OMPs at division sites. The synchronization of OMP biogenesis with cell wall growth results in the binary partitioning of OMPs as cells divide. Our study reveals that Gram-negative bacteria coordinate the assembly of two major cell envelope layers by rendering OMP biogenesis responsive to peptidoglycan maturation, a potential vulnerability that could be exploited in future antibiotic design.

20 August 2021 in Biochemical Society Transactions
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GRGiedre Ratkeviciute
Giedre Ratkeviciute
BCBenjamin F. Cooper
Benjamin F. Cooper
TKTimothy J. Knowles
Timothy J. Knowles
The solubilisation of membrane proteins (MPs) necessitates the overlap of two contradictory events; the extraction of MPs from their native lipid membranes and their subsequent stabilisation in aqueous environments. Whilst the current myriad of membrane mimetic systems provide a range of modus operandi, there are no golden rules for selecting the optimal pipeline for solubilisation of a specific MP hence a miscellaneous approach must be employed balancing both solubilisation efficiency and protein stability. In recent years, numerous diverse lipid membrane mimetic systems have been developed, expanding the pool of available solubilisation strategies. This review provides an overview of recent developments in the membrane mimetic field, with particular emphasis placed upon detergents, polymer-based nanodiscs and amphipols, highlighting the latest reagents to enter the toolbox of MP research.