Thomas Patrick Shanley

Thomas Patrick Shanley

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Thomas Patrick Shanley

Department of Pediatrics, University of Michigan, Ann Arbor, MI

Research Focus & Metrics

Academic Career Length

32Years (1995-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 September 2017 in American Journal of Respiratory and Critical Care Medicine
Verified
Journal Article
Closed access
HDHeidi J. Dalton
Heidi J. Dalton
RRRon Reeder
Ron Reeder
PGPamela Garcia-Filion
Pamela Garcia-Filion
RHRichard Holubkov
Richard Holubkov
RBRobert A. Berg
Robert A. Berg
CNCarol Nicholson
Carol Nicholson
Rationale: Extracorporeal membrane oxygenation (ECMO) is used for respiratory and cardiac failure in children but is complicated by bleeding and thrombosis. Objectives: (1) To measure the incidence of bleeding (blood loss requiring transfusion or intracranial hemorrhage) and thrombosis during ECMO support; (2) to identify factors associated with these complications; and (3) to determine the impact of these complications on patient outcome. Methods: This was a prospective, observational cohort study in pediatric, cardiac, and neonatal intensive care units in eight hospitals, carried out from December 2012 to September 2014. Measurements and Main Results: ECMO was used on 514 consecutive patients under age 19 years. Demographics, anticoagulation practices, severity of illness, circuitry components, bleeding, thrombotic events, and outcome were recorded. Survival was 54.9%. Bleeding occurred in 70.2%, including intracranial hemorrhage in 16%, and was independently associated with higher daily risk of mortality. Circuit component changes were required in 31.1%, and patient-related clots occurred in 12.8%. Laboratory sampling contributed to transfusion requirement in 56.6%, and was the sole reason for at least one transfusion in 42.2% of patients. Pump type was not associated with bleeding, thrombosis, hemolysis, or mortality. Hemolysis was predictive of subsequent thrombotic events. Neither hemolysis nor thrombotic events increased the risk of mortality. Conclusions: The incidences of bleeding and thrombosis are high during ECMO support. Laboratory sampling is a major contributor to transfusion during ECMO. Strategies to reduce the daily risk of bleeding and thrombosis, and different thresholds for transfusion, may be appropriate subjects of future trials to improve outcomes of children requiring this supportive therapy.

20 March 2015 in ACS Nano
Verified
Journal Article
Closed access
Pengyu ChenPengyu Chen
Pengyu Chen
MCMeng Ting Chung
Meng Ting Chung
WMWalker McHugh
Walker McHugh
RNRobert Nidetz
Robert Nidetz
YLYuwei Li
Yuwei Li
Katsuo KurabayashiKatsuo Kurabayashi
Katsuo Kurabayashi

1 May 2009 in Critical Care Medicine
Verified
Journal Article
Closed access
HWHector R. Wong
Hector R. Wong
NCNatalie Cvijanovich
Natalie Cvijanovich
GAGeoffrey L. Allen
Geoffrey L. Allen
RLRichard Lin
Richard Lin
NANick Anas
Nick Anas
TSThomas P. Shanley
Thomas P. Shanley
Objectives: To advance our biological understanding of pediatric septic shock, we measured the genome-level expression profiles of critically ill children representing the systemic inflammatory response syndrome (SIRS), sepsis, and septic shock spectrum. Design: Prospective observational study involving microarray-based bioinformatics. Setting: Multiple pediatric intensive care units in the United States. Patients: Children ≤10 years of age: 18 normal controls, 22 meeting criteria for SIRS, 32 meeting criteria for sepsis, and 67 meeting criteria for septic shock on day 1. The available day 3 samples included 20 patients still meeting sepsis criteria, 39 patients still meeting septic shock criteria, and 24 patients meeting the exclusive day 3 category, SIRS resolved. Interventions: None other than standard care. Measurements and Main Results: Longitudinal analyses were focused on gene expression relative to control samples and patients having paired day 1 and day 3 samples. The longitudinal analysis focused on up-regulated genes revealed common patterns of up-regulated gene expression, primarily corresponding to inflammation and innate immunity, across all patient groups on day 1. These patterns of up-regulated gene expression persisted on day 3 in patients with septic shock, but not to the same degree in the other patient classes. The longitudinal analysis focused on down-regulated genes demonstrated gene repression corresponding to adaptive immunity-specific signaling pathways and was most prominent in patients with septic shock on days 1 and 3. Gene network analyses based on direct comparisons across the SIRS, sepsis, and septic shock spectrum, and all available patients in the database, demonstrated unique repression of gene networks in patients with septic shock corresponding to major histocompatibility complex antigen presentation. Finally, analyses focused on repression of genes corresponding to zinc-related biology demonstrated that this pattern of gene repression is unique to patients with septic shock. Conclusions: Although some common patterns of gene expression exist across the pediatric SIRS, sepsis, and septic shock spectrum, septic shock is particularly characterized by repression of genes corresponding to adaptive immunity and zinc-related biology.

1 February 2015 in American Journal of Respiratory and Critical Care Medicine
Verified
Journal Article
Closed access
HWHector R. Wong
Hector R. Wong
NCNatalie Z. Cvijanovich
Natalie Z. Cvijanovich
NANick Anas
Nick Anas
GAGeoffrey L. Allen
Geoffrey L. Allen
NTNeal J. Thomas
Neal J. Thomas
CLChristopher J. Lindsell
Christopher J. Lindsell
Rationale: Using microarray data, we previously identified gene expression–based subclasses of septic shock with important phenotypic differences. The subclass-defining genes correspond to adaptive immunity and glucocorticoid receptor signaling. Identifying the subclasses in real time has theranostic implications, given the potential for immune-enhancing therapies and controversies surrounding adjunctive corticosteroids for septic shock. Objectives: To develop and validate a real-time subclassification method for septic shock. Methods: Gene expression data for the 100 subclass-defining genes were generated using a multiplex messenger RNA quantification platform (NanoString nCounter) and visualized using gene expression mosaics. Study subjects (n = 168) were allocated to the subclasses using computer-assisted image analysis and microarray-based reference mosaics. A gene expression score was calculated to reduce the gene expression patterns to a single metric. The method was tested prospectively in a separate cohort (n = 132). Measurements and Main Results: The NanoString-based data reproduced two septic shock subclasses. As previously, one subclass had decreased expression of the subclass-defining genes. The gene expression score identified this subclass with an area under the curve of 0.98 (95% confidence interval [CI95] = 0.96–0.99). Prospective testing of the subclassification method corroborated these findings. Allocation to this subclass was independently associated with mortality (odds ratio = 2.7; CI95 = 1.2–6.0; P = 0.016), and adjunctive corticosteroids prescribed at physician discretion were independently associated with mortality in this subclass (odds ratio = 4.1; CI95 = 1.4–12.0; P = 0.011). Conclusions: We developed and tested a gene expression–based classification method for pediatric septic shock that meets the time constraints of the critical care environment, and can potentially inform therapeutic decisions.

1 November 2014 in Pediatric Critical Care Medicine
Verified
Journal Article
Closed access
MPMurray M. Pollack
Murray M. Pollack
RHRichard Holubkov
Richard Holubkov
TFTomohiko Funai
Tomohiko Funai
ACAmy Clark
Amy Clark
JBJohn T. Berger
John T. Berger
TJTammara L. Jenkins
Tammara L. Jenkins
Objective: To investigate significant new morbidities associated with pediatric critical care . Design: Randomly selected, prospective cohort. Setting: PICU patients from eight medical and cardiac PICUs. Patients: This was a randomly selected, prospective cohort of PICU patients from eight medical and cardiac PICUs. Measurements and Main Results: The main outcomes measures were hospital discharge functional status measured by Functional Status Scale scores and new morbidity defined as an increase in the Functional Status Scale of more than or equal to 3. Of the 5,017 patients, there were 242 new morbidities (4.8%), 99 PICU deaths (2.0%), and 120 hospital deaths (2.4%). Both morbidity and mortality rates differed (p < 0.001) among the sites. The worst functional status profile was on PICU discharge and improved on hospital discharge. On hospital discharge, the good category decreased from a baseline of 72% to 63%, mild abnormality increased from 10% to 15%, moderate abnormality status increased from 13% to 14%, severe status increased from 4% to 5%, and very severe was unchanged at 1%. The highest new morbidity rates were in the neurological diagnoses (7.3%), acquired cardiovascular disease (5.9%), cancer (5.3%), and congenital cardiovascular disease (4.9%). New morbidities occurred in all ages with more in those under 12 months. New morbidities involved all Functional Status Scale domains with the highest proportions involving respiratory, motor, and feeding dysfunction. Conclusions: The prevalence of new morbidity was 4.8%, twice the mortality rate, and occurred in essentially all types of patients, in relatively equal proportions, and involved all aspects of function. Compared with historical data, it is possible that pediatric critical care has exchanged improved mortality rates for increased morbidity rates.

22 July 2009 in BMC Medicine
Verified
Journal Article
Open access
PDF file
HWHector R Wong
Hector R Wong
NCNatalie Cvijanovich
Natalie Cvijanovich
RLRichard Lin
Richard Lin
GAGeoffrey L Allen
Geoffrey L Allen
NTNeal J Thomas
Neal J Thomas
TSThomas P Shanley
Thomas P Shanley
Septic shock is a heterogeneous syndrome within which probably exist several biological subclasses. Discovery and identification of septic shock subclasses could provide the foundation for the design of more specifically targeted therapies. Herein we tested the hypothesis that pediatric septic shock subclasses can be discovered through genome-wide expression profiling.