Marcel D. Baer

Marcel D. Baer

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Marcel D. Baer

Physical Sciences Division, Pacific Northwest National Laboratory

Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 January 2018 in Science Advances
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Journal Article
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KHKatja Henzler
Katja Henzler
EFEvgenii O. Fetisov
Evgenii O. Fetisov
MGMirza Galib
Mirza Galib
MBMarcel D. Baer
Marcel D. Baer
BLBenjamin A. Legg
Benjamin A. Legg
JYJames J. De Yoreo
James J. De Yoreo
Ions and ion pairs are the species that lead to CaCO 3 nucleation.

12 July 2016 in Nature Communications
Verified
Journal Article
Open access
HJHaibao Jin
Haibao Jin
FJFang Jiao
Fang Jiao
MDMichael D. Daily
Michael D. Daily
YCYulin Chen
Yulin Chen
FYFeng Yan
Feng Yan
CCChun-Long Chen
Chun-Long Chen
An ability to develop sequence-defined synthetic polymers that both mimic lipid amphiphilicity for self-assembly of highly stable membrane-mimetic 2D nanomaterials and exhibit protein-like functionality would revolutionize the development of biomimetic membranes. Here we report the assembly of lipid-like peptoids into highly stable, crystalline, free-standing and self-repairing membrane-mimetic 2D nanomaterials through a facile crystallization process. Both experimental and molecular dynamics simulation results show that peptoids assemble into membranes through an anisotropic formation process. We further demonstrated the use of peptoid membranes as a robust platform to incorporate and pattern functional objects through large side-chain diversity and/or co-crystallization approaches. Similar to lipid membranes, peptoid membranes exhibit changes in thickness upon exposure to external stimuli; they can coat surfaces in single layers and self-repair. We anticipate that this new class of membrane-mimetic 2D nanomaterials will provide a robust matrix for development of biomimetic membranes tailored to specific applications.

17 April 2017 in Nature Materials
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XMXiang Ma
Xiang Ma
Shuai ZhangShuai Zhang
Shuai Zhang
FJFang Jiao
Fang Jiao
CNChristina J. Newcomb
Christina J. Newcomb
YZYuliang Zhang
Yuliang Zhang
JYJames J. De Yoreo
James J. De Yoreo

27 February 2017 in The Journal of Chemical Physics
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MGM. Galib
M. Galib
MBM. D. Baer
M. D. Baer
LSL. B. Skinner
L. B. Skinner
CMC. J. Mundy
C. J. Mundy
THT. Huthwelker
T. Huthwelker
JFJ. L. Fulton
J. L. Fulton
A combination of theory, X-ray diffraction (XRD) and extended x-ray absorption fine structure (EXAFS) are used to probe the hydration structure of aqueous Na+. The high spatial resolution of the XRD measurements corresponds to Qmax = 24 Å−1 while the first-reported Na K-edge EXAFS measurements have a spatial resolution corresponding to 2k = Qmax = 16 Å−1. Both provide an accurate measure of the shape and position of the first peak in the Na–O pair distribution function, gNaO(r). The measured Na–O distances of 2.384 ± 0.003 Å (XRD) and 2.37 ± 0.024 Å (EXAFS) are in excellent agreement. These measurements show a much shorter Na–O distance than generally reported in the experimental literature (Na–Oavg ∼ 2.44 Å) although the current measurements are in agreement with recent neutron diffraction measurements. The measured Na–O coordination number from XRD is 5.5 ± 0.3. The measured structure is compared with both classical and first-principles density functional theory (DFT) simulations. Both of the DFT-based methods, revPBE and BLYP, predict a Na–O distance that is too long by about 0.05 Å with respect to the experimental data (EXAFS and XRD). The inclusion of dispersion interactions (–D3 and –D2) significantly worsens the agreement with experiment by further increasing the Na–O distance by 0.07 Å. In contrast, the use of a classical Na–O Lennard-Jones potential with SPC/E water accurately predicts the Na–O distance as 2.39 Å although the Na–O peak is over-structured with respect to experiment.

28 September 2011 in The Journal of Chemical Physics
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MBMarcel D. Baer
Marcel D. Baer
CMChristopher J. Mundy
Christopher J. Mundy
MMMatthew J. McGrath
Matthew J. McGrath
IKI.-F. Will Kuo
I.-F. Will Kuo
JSJ. Ilja Siepmann
J. Ilja Siepmann
DTDouglas J. Tobias
Douglas J. Tobias
First-principles molecular dynamics simulations, in which the forces are computed from electronic structure calculations, have great potential to provide unique insight into structure, dynamics, electronic properties, and chemistry of interfacial systems that is not available from empirical force fields. The majority of current first-principles simulations are driven by forces derived from density functional theory with generalized gradient approximations to the exchange-correlation energy, which do not capture dispersion interactions. We have carried out first-principles molecular dynamics simulations of air-water interfaces employing a particular generalized gradient approximation to the exchange-correlation functional (BLYP), with and without empirical dispersion corrections. We assess the utility of the dispersion corrections by comparison of a variety of structural, dynamic, and thermodynamic properties of bulk and interfacial water with experimental data, as well as other first-principles and force field-based simulations.

4 July 2017 in Chemical Science
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TDTimothy T. Duignan
Timothy T. Duignan
MBMarcel D. Baer
Marcel D. Baer
GSGregory K. Schenter
Gregory K. Schenter
CMChristopher J. Mundy
Christopher J. Mundy
Single ion solvation free energies are one of the most important properties of electrolyte solutions and yet there is ongoing debate about what these values are. Only the values for neutral ion pairs are known.