The increased uptake of sensor technologies and precision farming tools for the dairy cattle sector is enabling real-time monitoring of animal health, welfare, and productivity. These digital advancements provide high-frequency, objective, and large-scale phenotypic data for breeding purposes. This review explores the potential of sensor-derived data to improve genetic and genomic evaluations in dairy cattle and outlines key challenges, opportunities, and approaches associated with their implementation. While these data streams have great potential for genetic evaluations, their integration into national and international breeding programs remains limited due to fragmentation across sensor brands, lack of standardization, and challenges related to data accessibility, data access and portability rights, business interests, and governance. A crucial aspect of leveraging digital technologies in dairy cattle breeding is data harmonization and integration. We highlight the importance of establishing standardized data collection and data sharing protocols, implementing robust quality control and data cleaning methodologies, as well as defining novel sensor-based traits and estimating their genetic background. In this context, we compiled heritability estimates for novel traits derived from data recorded by sensors and other technologies in dairy cattle populations. The development of phenomics in breeding programs, which involves integrating multisource data-including sensor-based, genomic, and management information-will be key to accelerating genetic progress, especially for traits related to animal welfare, health, resilience, and efficiency. This review presents a roadmap for the effective use of sensor-derived data in genetic evaluations, advocating for centralized data infrastructures, transparent data-sharing agreements, and the role of different stakeholders from academia and industry, including organizations such as the International Committee on Animal Recording (ICAR) in establishing global standards and guidelines. By addressing these challenges, dairy breeding programs can fully harness precision dairy farming technologies to enhance production and environmental efficiency, improve animal health and welfare, and drive sustainable genetic advancements in the dairy cattle sector.

The main aim of this study was to compare accuracies of imputation and genomic predictions based on single and joint reference populations for Norwegian Red (NRF) and a composite breed (DFS) consisting of Danish Red, Finnish Ayrshire, and Swedish Red. The single nucleotide polymorphism (SNP) data for NRF consisted of 2 data sets: one including 25,000 markers (NRF25K) and the other including 50,000 markers (NRF50K). The NRF25K data set had 2,572 bulls, and the NRF50K data set had 1,128 bulls. Four hundred forty-two bulls were genotyped in both data sets (double-genotyped bulls). The DFS data set (DSF50K) included 50,000 markers of 13,472 individuals, of which around 4,700 were progeny-tested bulls. The NRF25K data set was imputed to 50,000 density using the software Beagle. The average error rate for the imputation of NRF25K decreased slightly from 0.023 to 0.021, and the correlation between observed and imputed genotypes changed from 0.935 to 0.936 when comparing the NRF50K reference and the NRF50K-DFS50K joint reference imputations. A genomic BLUP (GBLUP) model and a Bayesian 4-component mixture model were used to predict genomic breeding values for the NRF and DFS bulls based on the single and joint NRF and DFS reference populations. In the multiple population predictions, accuracies of genomic breeding values increased for the 3 production traits (milk, fat, and protein yields) for both NRF and DFS. Accuracies increased by 6 and 1.3 percentage points, on average, for the NRF and DFS bulls, respectively, using the GBLUP model, and by 9.3 and 1.3 percentage points, on average, using the Bayesian 4-component mixture model. However, accuracies for health or reproduction traits did not increase from the multiple population predictions. Among the 3 DFS populations, Swedish Red gained most in accuracies from the multiple population predictions, presumably because Swedish Red has a closer genetic relationship with NRF than Danish Red and Finnish Ayrshire. The Bayesian 4-component mixture model performed better than the GBLUP model for most production traits for both NRF and DFS, whereas no advantage was found for health or reproduction traits. In general, combining NRF and DFS reference populations was useful in genomic predictions for both the NRF and DFS bulls.

The aim of this study was to estimate genetic parameters and genetic trends for male fertility in Norwegian Red bulls. We analyzed data on semen characteristics traits collected at the performance test station of young bulls from 1994 to 2016, in an andrology test used to ensure acceptable semen quality before being selected as an artificial insemination bull. Traits included were volume, concentration, and motility (percentage of moving sperm cells) in fresh samples and after storing for 24 and 48 h, and sperm defects. The data consisted of 14,972 ejaculates from 3,927 young (11-15 mo) Norwegian Red bulls. Genetic parameters were estimated using bivariate linear animal models that included age in months, group-year, and collection-group (main effect of the interaction between ejaculate number and interval between collections) as fixed effects, and test-day and additive genetic and permanent environment effect of the bull as random effects. Considerable genetic coefficients of variation were found for concentration and volume, with lower values for motility. Estimated heritabilities ranged from 0.02 and 0.03 (for sperm defects and motility in fresh samples) to 0.14 (volume and concentration measured on a continuous scale). All estimated genetic correlations were favorable, but the genetic correlations between volume and concentration and volume and sperm defects were not significantly different from zero. The genetic correlations between concentration and motility traits ranged from 0.53 to 0.83, and those between volume and the motility traits were between 0.24 and 0.57. All traits showed a slightly unfavorable genetic trend. Our results indicate that selection of bulls with better sperm quality is possible.

MicroRNAs (miRNAs) are short, non-coding RNAs that regulate gene expression at the post-transcriptional level and play a key role in the control of innate and adaptive immune responses. For a subclinical infection such as bovine streptococcal mastitis, early detection is a great challenge, and miRNA profiling could potentially assist in the diagnosis and contribute to the understanding of the pathogenicity and defense mechanisms. We have examined the miRNA repertoire and the transcript level of six key immune genes [tumor necrosis factor alpha (TNFα), interleukin-1 beta (IL-1β), interleukin-6 (IL-6), interleukin-8 (IL-8), interleukin-10 (IL-10) and transforming growth factor beta 1 (TGFβ1)] during the early phase response of bovine immature macrophages to in vitro infection with live Streptococcus agalactiae. Next generation sequencing of small RNA libraries from 20 cultures of blood monocyte-derived macrophages exposed to either one of two sequence types of S. agalactiae (ST103 or ST12) for 6 h in vitro and unchallenged controls was performed. Analyzes of over 356 million high quality sequence reads, revealed differential expression of 17 and 44 miRNAs (P < 0.05) in macrophages infected with ST103 and ST12, respectively, versus unchallenged control cultures. We also identified the expression of 31 potentially novel bovine miRNAs. Pathway analysis of the differentially regulated miRNAs and their predicted target genes in the macrophages infected with ST12 revealed significant enrichment for inflammatory response and apoptosis, while significant enrichment for integrin and GABA signaling were found in ST103 infected macrophages. Furthermore, both bacterial strains regulated miRNAs involved in the alternative activation of macrophages. The transcript levels of TNF-α, IL-1β, IL-6, IL-8 and IL-10 were significantly up-regulated by both bacterial strains, however the expression of TGFβ1 was significantly down-regulated only by ST12. Our study identified pathogen-induced differential regulation of miRNAs controlling inflammation and polarization in bovine macrophages. This implies that miRNAs have potential to serve as biomarkers for early detection of bacterial infection.

A bivariate threshold-linear (TL) and a bivariate linear-linear (LL) model were assessed for the genetic analysis of 56-d nonreturn (NR56) and interval from calving to first insemination (CFI) in first-lactation Norwegian Red (former Norwegian Dairy Cattle) (NRF). Three different datasets were used to infer genetic parameters and to predict transmitting abilities for NRF sires. Mean progeny group sizes were 147.8, 102.7, and 56.5 daughters, and the corresponding number of sires were 746, 743, and 742 in the 3 datasets. Otherwise, the structures of the 3 datasets were similar. When the TL model was used, heritability of liability to NR56 was 2.8% in the 2 larger datasets and 3.8% in the smallest dataset. In the LL model, the heritability of NR56 in the largest dataset and in the 2 smaller datasets was 1.2 and 0.9%, respectively. For CFI, the heritability was similar in TL and LL models, ranging from 2.4 to 2.7%. The small heritability of the 2 reproductive traits implies that most of the variation is environmental and that large progeny groups are required to get accurate sire PTA. The point estimates of the genetic correlation between NR56 and CFI were near zero in both models. The 2 bivariate models were compared in terms of predictive ability using logistic regression and a chi2 statistic based on differences between observed and predicted outcomes for NR56 in a separate dataset. Comparison was also with respect to ranking of sires and correlations between sire posterior means (TL model) and PTA (LL model). We found very small differences in ability to predict NR56 between the 2 bivariate models, regardless of the dataset used. Correlations between sire posterior means (TL) and sire PTA (LL) and rank correlations between sire evaluations were all >0.98 in the 3 datasets. At present, the LL model is preferred for sire evaluations of NR56 and CFI in NRF. This is because the LL model is less computationally demanding and more robust with respect to the structure of the data than TL.

The current study aimed to investigate new udder health traits based on data from automatic milking systems (AMS) for use in routine genetic evaluations. Data were from 77 commercial herds; out of these, 24 had equipment for measuring online cell count (OCC), whereas all had data on electrical conductivity (EC). A total of 4,714 Norwegian Red dairy cows and 2,363,928 milkings were included in the genetic analyses. Electrical conductivity was available on quarter level for each milking, whereas OCC was measured per milking. The AMS traits analyzed were log-transformed online cell count (lnOCC), maximum conductivity (ECmax), mean conductivity (ECmean), elevated mastitis risk (EMR), and log-transformed EMR (lnEMR). In addition, lactation mean somatic cell score (LSCS) was collected from the Norwegian dairy herd recording system. Elevated mastitis risk expresses the probability of a cow having mastitis and was calculated from smoothed lnOCC values according to individual trend and level of the OCC curve. The udder health traits from AMS were analyzed as repeated milkings from 30 to 320 DIM, and LSCS as repeated parities. In addition, both ECmax and lnOCC were analyzed as multiple traits by splitting the lactation into 5 periods. (Co)variance components were estimated from bivariate mixed linear animal models, and investigated traits showed genetic variation. Estimated heritabilities of ECmean, ECmax, and lnEMR were 0.35, 0.23, and 0.12, respectively, whereas EMR and lnOCC both showed heritabilities of 0.09. Heritability varied between periods of lactation, from 0.04 to 0.13 for lnOCC and from 0.12 to 0.27 for ECmax, although standard errors of certain periods were large. Genetic correlations among the AMS traits ranged from 0 to 0.99. The genetic correlations between EC-based traits and OCC-based traits in AMS were 0. Genetic correlations with LSCS were favorable, ranging from 0.37 to 0.80 (±0.11-0.22). The strongest correlation (0.80 ± 0.13) was found between LSCS and lnEMR. Results question the value of ECmax and ECmean as indicators of udder health in genetic evaluations and suggest OCC to be more valuable in this manner. This study demonstrates a potential of using AMS data as additional information on udder health for genetic evaluations, although further investigation is recommended before these traits can be implemented.