James Gardner

James Gardner

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James Gardner

Department of Chemistry, University of Warwick 1 , Gibbet Hill Road, Coventry CV4 7AL, United Kingdom

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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4 December 2023 in The Journal of Physical Chemistry C
Verified
Journal Article
Open access
WSWojciech G. Stark
Wojciech G. Stark
JWJulia Westermayr
Julia Westermayr
ODOscar A Douglas-Gallardo
Oscar A Douglas-Gallardo
JGJames Gardner
James Gardner
SHScott Habershon
Scott Habershon
RMReinhard J. Maurer
Reinhard J. Maurer
The reactive chemistry of molecular hydrogen at surfaces, notably dissociative sticking and hydrogen evolution, plays a crucial role in energy storage and fuel cells. Theoretical studies can help to decipher underlying mechanisms and reaction design, but studying dynamics at surfaces is computationally challenging due to the complex electronic structure at interfaces and the high sensitivity of dynamics to reaction barriers. In addition, ab initio molecular dynamics, based on density functional theory, is too computationally demanding to accurately predict reactive sticking or desorption probabilities, as it requires averaging over tens of thousands of initial conditions. High-dimensional machine learning-based interatomic potentials are starting to be more commonly used in gas-surface dynamics, yet robust approaches to generate reliable training data and assess how model uncertainty affects the prediction of dynamic observables are not well established. Here, we employ ensemble learning to adaptively generate training data while assessing model performance with full uncertainty quantification (UQ) for reaction probabilities of hydrogen scattering on different copper facets. We use this approach to investigate the performance of two message-passing neural networks, SchNet and PaiNN. Ensemble-based UQ and iterative refinement allow us to expose the shortcomings of the invariant pairwise-distance-based feature representation in the SchNet model for gas-surface dynamics.

28 July 2023 in The Journal of Physical Chemistry C
Verified
Journal Article
Open access
JGJames Gardner
James Gardner
SHScott Habershon
Scott Habershon
RMReinhard J. Maurer
Reinhard J. Maurer
Mixed quantum-classical (MQC) methods for simulating the dynamics of molecules at metal surfaces have the potential to accurately and efficiently provide mechanistic insight into reactive processes. Here, we introduce simple two-dimensional models for the scattering of diatomic molecules at metal surfaces based on recently published electronic structure data. We apply several MQC methods to investigate their ability to capture how nonadiabatic effects influence molecule-metal energy transfer during the scattering process. Specifically, we compare molecular dynamics with electronic friction, Ehrenfest dynamics, independent electron surface hopping, and the broadened classical master equation approach. In the case of independent electron surface hopping, we implement a simple decoherence correction approach and assess its impact on vibrationally inelastic scattering. Our results show that simple, low-dimensional models can be used to qualitatively capture experimentally observed vibrational energy transfer and provide insight into the relative performance of different MQC schemes. We observe that all approaches predict similar kinetic energy dependence but return different vibrational energy distributions. Finally, by varying the molecule-metal coupling, we can assess the coupling regime in which some MQC methods become unsuitable.

2 May 2022 in The Journal of Chemical Physics
Verified
Journal Article
Closed access
PDF file
JGJames Gardner
James Gardner
ODOscar A Douglas-Gallardo
Oscar A Douglas-Gallardo
WSWojciech G. Stark
Wojciech G. Stark
JWJulia Westermayr
Julia Westermayr
SJSvenja M. Janke
Svenja M. Janke
RMReinhard J. Maurer
Reinhard J. Maurer
Accurate and efficient methods to simulate nonadiabatic and quantum nuclear effects in high-dimensional and dissipative systems are crucial for the prediction of chemical dynamics in the condensed phase. To facilitate effective development, code sharing, and uptake of newly developed dynamics methods, it is important that software implementations can be easily accessed and built upon. Using the Julia programming language, we have developed the NQCDynamics.jl package, which provides a framework for established and emerging methods for performing semiclassical and mixed quantum–classical dynamics in the condensed phase. The code provides several interfaces to existing atomistic simulation frameworks, electronic structure codes, and machine learning representations. In addition to the existing methods, the package provides infrastructure for developing and deploying new dynamics methods, which we hope will benefit reproducibility and code sharing in the field of condensed phase quantum dynamics. Herein, we present our code design choices and the specific Julia programming features from which they benefit. We further demonstrate the capabilities of the package on two examples of chemical dynamics in the condensed phase: the population dynamics of the spin-boson model as described by a wide variety of semiclassical and mixed quantum–classical nonadiabatic methods and the reactive scattering of H2 on Ag(111) using the molecular dynamics with electronic friction method. Together, they exemplify the broad scope of the package to study effective model Hamiltonians and realistic atomistic systems.

8 February 2023 in The Journal of Chemical Physics
Verified
Journal Article
Open access
PDF file
JGJames Gardner
James Gardner
DCDaniel Corken
Daniel Corken
SJSvenja M. Janke
Svenja M. Janke
SHScott Habershon
Scott Habershon
RMReinhard J. Maurer
Reinhard J. Maurer
Independent electron surface hopping (IESH) is a computational algorithm for simulating the mixed quantum–classical molecular dynamics of adsorbate atoms and molecules interacting with metal surfaces. It is capable of modeling the nonadiabatic effects of electron–hole pair excitations on molecular dynamics. Here, we present a transparent, reliable, and efficient implementation of IESH, demonstrating its ability to predict scattering and desorption probabilities across a variety of systems, ranging from model Hamiltonians to full dimensional atomistic systems. We further show how the algorithm can be modified to account for the application of an external bias potential, comparing its accuracy to results obtained using the hierarchical quantum master equation. Our results show that IESH is a practical method for modeling coupled electron-nuclear dynamics at metal surfaces, especially for highly energetic scattering events.

12 November 2021 in Science Advances
Verified
Journal Article
Open access
MKMarvin Knol
Marvin Knol
HAHadi H. Arefi
Hadi H. Arefi
DCDaniel Corken
Daniel Corken
JGJames Gardner
James Gardner
FTF. Stefan Tautz
F. Stefan Tautz
CWChristian Wagner
Christian Wagner
Competing chemical and van der Waals interactions keep a molecule in the vertical until it is knocked over by heat.

5 July 2021
Verified
Conference Paper
Closed access
TETaner Esat
Taner Esat
MKMarvin Knol
Marvin Knol
PLPhilipp Leinen
Philipp Leinen
MGMatthew F. B. Green
Matthew F. B. Green
MEMalte Esders
Malte Esders
FTF. Stefan Tautz
F. Stefan Tautz
The assembly of single-molecule devices with the help of the manipulation capability of scanning probe microscopes offers many opportunities for quantum- and nanotechnology. A key challenge is fabricating device structures that can overcome their attraction to the underlying surface and thus protrude from the two-dimensional flatlands of the surface. In my talk, I will report the fabrication of such a structure: we use the tip of a scanning probe microscope to lift a large planar aromatic molecule into an upright, standing geometry on a pedestal of two metal adatoms. This atypical upright orientation of the single molecule, whose stability can be understood as the result of a fine balance between chemical and dispersion forces, enables the system to function as a quantum dot and an on-demand coherent single-electron field emitter. If attached to the tip of the microscope, the standing molecule can also be applied as a sensitive quantum dot sensor. We anticipate that other metastable adsorbate configurations might also be accessible, thereby opening up the third dimension for the design of functional nanostructures on surfaces. Finally, we have made first steps into the direction of an autonomous robotic nanofabrication of single-molecule devices.