Jacob C. Cooper

Jacob C. Cooper

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Jacob C. Cooper

University of Nebraska Kearney

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 February 2022 in Ecology Letters
Verified
Journal Article
Open access
PDF file
JTJoseph A Tobias
Joseph A Tobias
CSCatherine Sheard
Catherine Sheard
APAlex L Pigot
Alex L Pigot
ADAdam John Mears Devenish
Adam John Mears Devenish
JYJingyi Yang
Jingyi Yang
MSMatthias Schleuning
Matthias Schleuning
Functional traits offer a rich quantitative framework for developing and testing theories in evolutionary biology, ecology and ecosystem science. However, the potential of functional traits to drive theoretical advances and refine models of global change can only be fully realised when species‐level information is complete. Here we present the AVONET dataset containing comprehensive functional trait data for all birds, including six ecological variables, 11 continuous morphological traits, and information on range size and location. Raw morphological measurements are presented from 90,020 individuals of 11,009 extant bird species sampled from 181 countries. These data are also summarised as species averages in three taxonomic formats, allowing integration with a global phylogeny, geographical range maps, IUCN Red List data and the eBird citizen science database. The AVONET dataset provides the most detailed picture of continuous trait variation for any major radiation of organisms, offering a global template for testing hypotheses and exploring the evolutionary origins, structure and functioning of biodiversity.

1 January 2016 in Trends in Ecology & Evolution
Verified
Journal Article
Closed access
MSM. Simões
M. Simões
LBL. Breitkreuz
L. Breitkreuz
MAM. Alvarado
M. Alvarado
SBS. Baca
S. Baca
JCJ.C. Cooper
J.C. Cooper
BLB.S. Lieberman
B.S. Lieberman

4 December 2017 in Global Ecology and Biogeography
Verified
Journal Article
Closed access
PDF file
JCJacob C. Cooper
Jacob C. Cooper
JSJorge Soberón
Jorge Soberón

27 October 2017 in Systematic Biology
Verified
Journal Article
Closed access
PDF file
ESErin E Saupe
Erin E Saupe
NBNarayani Barve
Narayani Barve
HOHannah L. Owens
Hannah L. Owens
JCJacob C. Cooper
Jacob C. Cooper
PHPeter A Hosner
Peter A Hosner
APA. Townsend Peterson
A. Townsend Peterson
Evolutionary dynamics of abiotic ecological niches across phylogenetic history can shed light on large-scale biogeographic patterns, macroevolutionary rate shifts, and the relative ability of lineages to respond to global change. An unresolved question is how best to represent and reconstruct evolution of these complex traits at coarse spatial scales through time. Studies have approached this question by integrating phylogenetic comparative methods with niche estimates inferred from correlative and other models. However, methods for estimating niches often produce incomplete characterizations, as they are inferred from present-day distributions that may be limited in full expression of the fundamental ecological niche by biotic interactions, dispersal limitations, and the existing set of environmental conditions. Here, we test whether incomplete niche characterizations inherent in most estimates of species’ niches bias phylogenetic reconstructions of niche evolution, using simulations of virtual species with known niches. Results establish that incompletely characterized niches inflate estimates of evolutionary change and lead to error in ancestral state reconstructions. Our analyses also provide a potential mechanism to explain the frequent observation that maximum thermal tolerances are more conserved than minimum thermal tolerances: populations and species experience more spatial variation in minimum temperature than in maximum temperature across their distributions and, consequently, may experience stronger diversifying selection for cold tolerance.

27 June 2020 in Ecology and Evolution
Verified
Journal Article
Open access
PDF file
HOHannah L. Owens
Hannah L. Owens
VRVivian Ribeiro
Vivian Ribeiro
ESErin E. Saupe
Erin E. Saupe
MCMarlon E. Cobos
Marlon E. Cobos
PHPeter A. Hosner
Peter A. Hosner
APA. Townsend Peterson
A. Townsend Peterson
Reconstructing ecological niche evolution can provide insight into the biogeography and diversification of evolving lineages. However, comparative phylogenetic methods may infer the history of ecological niche evolution inaccurately because (a) species' niches are often poorly characterized; and (b) phylogenetic comparative methods rely on niche summary statistics rather than full estimates of species' environmental tolerances. Here, we propose a new framework for coding ecological niches and reconstructing their evolution that explicitly acknowledges and incorporates the uncertainty introduced by incomplete niche characterization. Then, we modify existing ancestral state inference methods to leverage full estimates of environmental tolerances. We provide a worked empirical example of our method, investigating ecological niche evolution in the New World orioles (Aves: Passeriformes: Icterus spp.). Temperature and precipitation tolerances were generally broad and conserved among orioles, with niche reduction and specialization limited to a few terminal branches. Tools for performing these reconstructions are available in a new R package called nichevol .

6 September 2017 in Proceedings Of The Royal Society B-Biological Sciences
Verified
Journal Article
Open access
PDF file
KIKathryn Ingenloff
Kathryn Ingenloff
CHChristopher M. Hensz
Christopher M. Hensz
TATashitso Anamza
Tashitso Anamza
VBVijay Barve
Vijay Barve
LCLindsay P. Campbell
Lindsay P. Campbell
JSJorge Soberón
Jorge Soberón
Species invasions represent a significant dimension of global change yet the dynamics of invasions remain poorly understood and are considered rather unpredictable. We explored interannual dynamics of the invasion process in the Eurasian collared dove ( Streptopelia decaocto ) and tested whether the advance of the invasion front of the species in North America relates to centrality (versus peripherality) within its estimated fundamental ecological niche. We used ecological niche modelling approaches to estimate the dimensions of the fundamental ecological niche on the Old World distribution of the species, and then transferred that model to the New World as measures of centrality versus peripherality within the niche for the species. Although our hypothesis was that the invasion front would advance faster over more favourable (i.e. more central) conditions, the reverse was the case: the invasion expanded faster in areas presenting less favourable (i.e. more peripheral) conditions for the species as it advanced across North America. This result offers a first view of a predictive approach to the dynamics of species' invasions, and thereby has relevant implications for the management of invasive species, as such a predictive understanding would allow better anticipation of coming steps and advances in the progress of invasions, important to designing and guiding effective remediation and mitigation efforts.