Dissolved organic carbon (DOC) concentrations in lakes are changing globally, but little is known about potential ecosystem impacts.We evaluated the relationship between DOC and whole‐lake primary production in arctic and boreal lakes. Both light extinction (inhibits primary production) and nutrient availability (stimulates primary production) are positively and nonlinearly related to DOC concentration. These nonlinearities create a threshold DOC concentration (4.8 mg L⁻¹), below which the DOC‐primary production relationship is positive, and above which the relationship is negative. DOC concentration varies maximally between regions, creating a unimodal relationship between primary production and DOC that emerges at broader scales because arctic lakes largely fall below the threshold DOC concentration, but boreal lakes fall above it. Our analysis suggests that the impact of DOC trends on lake primary production will vary across lakes and regions as a result of contrasting baseline conditions relative to the DOC threshold.

Bacterioplankton respiration (BR) may represent the largest single sink of organic carbon in the biosphere and constitutes an important driver of atmospheric carbon dioxide (CO₂) emissions from freshwaters. Complete understanding of BR is precluded by the fact that most studies need to assume a respiratory quotient (RQ; mole of CO₂ produced per mole of O₂ consumed) to calculate rates of BR. Many studies have, without clear support, assumed a fixed RQ around 1. Here we present 72 direct measurements of bacterioplankton RQ that we carried out in epilimnetic samples of 52 freshwater sites in Québec (Canada), using O₂ and CO₂ optic sensors. The RQs tended to converge around 1.2, but showed large variability (s.d.=0.45) and significant correlations with major gradients of ecosystem-level, substrate-level and bacterial community-level characteristics. Experiments with natural bacterioplankton using different single substrates suggested that RQ is intimately linked to the elemental composition of the respired compounds. RQs were on average low in net autotrophic systems, where bacteria likely were utilizing mainly reduced substrates, whereas we found evidence that the dominance of highly oxidized substrates, for example, organic acids formed by photo-chemical processes, led to high RQ in the more heterotrophic systems. Further, we suggest that BR contributes to a substantially larger share of freshwater CO₂ emissions than presently believed based on the assumption that RQ is ∼ 1. Our study demonstrates that bacterioplankton RQ is not only a practical aspect of BR determination, but also a major ecosystem state variable that provides unique information about aquatic ecosystem functioning.

Despite the rapidly increasing volume of research on the biological and photochemical degradation of DOC (dissolved organic carbon) in aquatic environments, little is known of the large-scale patterns in biologically and photochemically degradable DOC (BDOC and PDOC, respectively) in continental watersheds, and on the links that exist between these two key properties that greatly influence the flow of carbon from continents to oceans. Here we explored the patterns in the concentrations and proportions of BDOC and PDOC across hundreds of boreal lakes, rivers and wetlands spanning a large range of system trophic status and terrestrial influence, and compared the drivers of these two reactive pools of DOC at the landscape level. Using standardized incubations of natural waters, we found that the concentrations of BDOC and PDOC covaried across all systems studied but were nevertheless related to different pools of dissolved organic matter (DOM; identified by fluorescence analyses) in ambient waters. Concentrations of nutrients and protein-like fluorescent DOM (FDOM) explained nearly half of the variation in BDOC, whereas PDOC was exclusively predicted by DOM optical properties, consistent with the photochemical degradability of specific FDOM pools that we experimentally determined. The concentrations of colored DOM (CDOM), which we use here as a proxy of terrestrial influence, almost entirely accounted for the observed relationship between FDOM and the concentrations of both BDOC and PDOC. The concentrations of CDOM and of the putative biolabile fluorescence component shifted from complete decoupling in clear-water environments to strong coupling in darker streams and wetlands. This suggests a baseline autochthonous BDOC pool fueled by internal production that is gradually overwhelmed by land-derived BDOC as terrestrial influence increases across landscape gradients. The importance of land as a major source of both biologically and photochemically degradable DOC for continental watersheds resulted in a partial coupling of those carbon pools in natural freshwaters, despite fundamental contrasts in terms of their composition and regulation.

Boreal rivers and streams are known as hot spots of CO₂ emissions, yet their contribution to CH₄ emissions has traditionally been assumed to be negligible, due to the spatially fragmented data and lack of regional studies addressing both gases simultaneously. Here we explore the regional patterns in river CO₂ and CH₄ concentrations (pCO₂ and pCH₄), gas exchange coefficient (k), and the resulting emissions in a lowland boreal region of Northern Québec. Rivers and streams were systematically supersaturated in both gases, with both pCO₂ and pCH₄ declining along the river continuum. The k was on average low and increased with stream order, consistent with the hydrology of this flat landscape. The smallest streams (order 1), which represent < 20% of the total river surface, contributed over 35% of the total fluvial greenhouse gas (GHG) emissions. The end of winter and the spring thaw periods, which are rarely included in annual emission budgets, contributed on average 21% of the annual GHG emissions. As a whole, the fluvial network acted as significant source of both CO₂ and CH₄, releasing on average 1.5 tons of C (CO₂ eq) yr⁻¹ km⁻² of landscape, of which CH₄ emissions contributed approximately 34%. We estimate that fluvial CH₄ emissions represent 41% of the regional aquatic (lakes, reservoirs, and rivers) CH₄ emissions, despite the relatively small riverine surface (4.3% of the total aquatic surface). We conclude that these fluvial networks in boreal lowlands play a disproportionately large role as hot spots for CO₂ and more unexpectedly for CH₄ emissions.