Takashi Kumagai

Takashi Kumagai

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Takashi Kumagai

Institute for Molecular Science, National Institutes of Natural Sciences

Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 December 2013 in Nature Chemistry
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Journal Article
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TKTakashi Kumagai
Takashi Kumagai
FHFelix Hanke
Felix Hanke
SGSylwester Gawinkowski
Sylwester Gawinkowski
JSJohn Sharp
John Sharp
KKKonstantinos Kotsis
Konstantinos Kotsis
LGLeonhard Grill
Leonhard Grill

4 July 2016 in Nature Chemistry
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JLJanina N. Ladenthin
Janina N. Ladenthin
TFThomas Frederiksen
Thomas Frederiksen
MPMats Persson
Mats Persson
JSJohn C. Sharp
John C. Sharp
SGSylwester Gawinkowski
Sylwester Gawinkowski
TKTakashi Kumagai
Takashi Kumagai

27 November 2011 in Nature Materials
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Journal Article
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TKT. Kumagai
T. Kumagai
ASAkitoshi Shiotari
Akitoshi Shiotari
HOH. Okuyama
H. Okuyama
SHS. Hatta
S. Hatta
TAT. Aruga
T. Aruga
HUH. Ueba
H. Ueba

24 April 2008 in Physical Review Letters
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Journal Article
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TKT. Kumagai
T. Kumagai
MKM. Kaizu
M. Kaizu
SHS. Hatta
S. Hatta
HOH. Okuyama
H. Okuyama
TAT. Aruga
T. Aruga
YMY. Morikawa
Y. Morikawa
The dynamics of water dimers was investigated at the single-molecule level by using a scanning tunneling microscope. The two molecules in a water dimer, bound on a Cu(110) surface at 6 K, were observed to exchange their roles as hydrogen-bond donor and acceptor via hydrogen-bond rearrangement. The interchange rate is ∼60 times higher for (H2O)2 than for (D2O)2, suggesting that quantum tunneling is involved in the process. The interchange rate is enhanced upon excitation of the intermolecular mode that correlates with the reaction coordinate.

16 January 2019 in Journal of the American Chemical Society
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Journal Article
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YLYair Litman
Yair Litman
JRJeremy O. Richardson
Jeremy O. Richardson
TKTakashi Kumagai
Takashi Kumagai
MRMariana Rossi
Mariana Rossi
We address the double hydrogen transfer (DHT) dynamics of the porphycene molecule, a complex paradigmatic system in which the making and breaking of H-bonds in a highly anharmonic potential energy surface require a quantum mechanical treatment not only of the electrons but also of the nuclei. We combine density functional theory calculations, employing hybrid functionals and van der Waals corrections, with recently proposed and optimized path-integral ring-polymer methods for the approximation of quantum vibrational spectra and reaction rates. Our full-dimensional ring-polymer instanton simulations show that below 100 K the concerted DHT tunneling pathway dominates but between 100 and 300 K there is a competition between concerted and stepwise pathways when nuclear quantum effects are included. We obtain ground-state reaction rates of 2.19 × 1011 s–1 at 150 K and 0.63 × 1011 s–1 at 100 K, in good agreement with experiment. We also reproduce the puzzling N–H stretching band of porphycene with very good accuracy from thermostated ring-polymer molecular dynamics simulations. The position and line shape of this peak, centered at around 2600 cm–1 and spanning 750 cm–1, stem from a combination of very strong H-bonds, the coupling to low-frequency modes, and the access to cis-like isomeric conformations, which cannot be appropriately captured with classical-nuclei dynamics. These results verify the appropriateness of our general theoretical approach and provide a framework for a deeper physical understanding of hydrogen transfer dynamics in complex systems.

11 December 2013 in Physical Review Letters
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Journal Article
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TKTakashi Kumagai
Takashi Kumagai
FHFelix Hanke
Felix Hanke
SGSylwester Gawinkowski
Sylwester Gawinkowski
JSJohn Sharp
John Sharp
KKKonstantinos Kotsis
Konstantinos Kotsis
LGLeonhard Grill
Leonhard Grill
We report the direct observation of intramolecular hydrogen atom transfer reactions (tautomerization) within a single porphycene molecule on a Cu(110) surface by scanning tunneling microscopy. It is found that the tautomerization can be induced via inelastic electron tunneling at 5 K. By measuring the bias-dependent tautomerization rate of isotope-substituted molecules, we can assign the scanning tunneling microscopy-induced tautomerization to the excitation of specific molecular vibrations. Furthermore, these vibrations appear as characteristic features in the dI/dV spectra measured over individual molecules. The vibrational modes that are associated with the tautomerization are identified by density functional theory calculations. At higher temperatures above ∼75  K, tautomerization is induced thermally and an activation barrier of about 168 meV is determined from an Arrhenius plot.