Dynamic Graph Neural Networks (GNNs) combine temporal information with GNNs to capture structural, temporal, and contextual relationships in dynamic graphs simultaneously, leading to enhanced performance in various applications. As the demand for dynamic GNNs continues to grow, numerous models and frameworks have emerged to cater to different application needs. There is a pressing need for a comprehensive survey that evaluates the performance, strengths, and limitations of various approaches in this domain. This paper aims to fill this gap by offering a thorough comparative analysis and experimental evaluation of dynamic GNNs. It covers 91 dynamic GNN models with a novel taxonomy, 17 dynamic GNN training frameworks, and commonly used benchmarks. We also evaluate the experimental results of ten representative dynamic GNN models and five frameworks on six datasets. Evaluation metrics focus on convergence accuracy, training efficiency, and GPU memory usage, enabling a thorough performance comparison across various models and frameworks. From the analysis and evaluation results, we identify key challenges and offer principles for future research to enhance the design of models and frameworks in the dynamic GNNs field.

In this paper, we study a new variant of trajectory similarity search from the context of continuous query processing. Given a moving object from s to $d$ , following a reference route $T_r$ , we monitor the trajectory similarity between the reference route and the current partial route at each timestamp for online detour detection. Since existing trajectory distance measures fail to adequately capture the deviation between a partial route and a complete route, we propose a partial trajectory similarity measure to bridge the gap. In particular, we enumerate all the possible routes extended from the partial route to reach the destination d and calculate their minimum distance to $T_r$ . We consider deviation calculation in both Euclidean space and road networks. In Euclidean space, we can directly infer the optimal future path with the minimum trajectory distance. In road networks, we propose an efficient expansion algorithm with a suite of pruning rules. Furthermore, we propose efficient incremental processing strategies to facilitate continuous query processing for moving objects. Our experiments are conducted on multiple real datasets and the experimental results verify the efficiency of our query processing algorithms.

Identifying pathogenic variants from the vast majority of nucleotide variation remains a challenge. We present a method named Multimodal Annotation Generated Pathogenic Impact Evaluator (MAGPIE) that predicts the pathogenicity of multi-type variants. MAGPIE uses the ClinVar dataset for training and demonstrates superior performance in both the independent test set and multiple orthogonal validation datasets, accurately predicting variant pathogenicity. Notably, MAGPIE performs best in predicting the pathogenicity of rare variants and highly imbalanced datasets. Overall, results underline the robustness of MAGPIE as a valuable tool for predicting pathogenicity in various types of human genome variations. MAGPIE is available at https://github.com/shenlab-genomics/magpie.

Thanks to the rapid advances in artificial intelligence, a brand new venue for database performance optimization is through deep neural networks and the reinforcement learning paradigm. Alongside the long literature in this regime, an iconic and crucial problem is the index structure building. For this problem, the prior works have largely adopted a pure learning-based solution replacing the traditional methods such as a B-tree and Hashing. While this line of research has drawn much attention in the field, they ubiquitously abandon the semantic guarantees and also suffer from performance loss in certain scenarios. In this work, we propose the Neural Index Search (NIS) framework. The core to this framework is to train a search policy to find a near optimal combination plan over the existing index structures, together with the required configuration parameters associated with each index structure in the plan. We argue that compared against the pure learning approaches, NIS enjoys the advantages brought by the chosen conventional index structures and further robustly enhances the performance from any singular index structure. Extensive empirical results demonstrate that our framework achieves state-of-the-art performances on several benchmarks.

The data produced by various services should be stored and managed in an appropriate format for gaining valuable knowledge conveniently. This leads to the emergence of various data models, including relational, semi-structured, and graph models, and so on. Considering the fact that the mature relational databases established on relational data models are still predominant in today’s market, it has fueled interest in storing and processing semi-structured data and graph data in relational databases so that mature and powerful relational databases’ capabilities can all be applied to these various data. In this survey, we review existing methods on mapping semi-structured data and graph data into relational tables, analyze their major features, and give a detailed classification of those methods. We also summarize the merits and demerits of each method, introduce open research challenges, and present future research directions. With this comprehensive investigation of existing methods and open problems, we hope this survey can motivate new mapping approaches through drawing lessons from each model’s mapping strategies, as well as a new research topic - mapping multi-model data into relational tables.

Recent work has applied learning-based approaches to replace the conventional cost model, but these approaches are expensive to train and result in high inference overheads. Furthermore, due to a lack of explainability, models trained for one database may not be easily transferred to another, requiring a complete re-training process. In this paper, we propose a new approach to tuning the conventional formula-based cost model for DBMS. Our approach involves identifying important parameters within the cost model rules and using a fast-learning model to adjust them for each specific hardware and software configuration of the DBMS deployment. We dynamically partition the search space of hardware and software configurations to gradually refine the cost model estimation. To apply our cost model to a new DBMS instance, we start with a rough estimation and progressively refine it with finer granularity. Our experiments with different hardware and software configurations show that our approach enables the conventional cost model to be quickly transferred to any database instance, achieving comparable results to a fine-tuned learning-based model. Overall, our approach provides a practical solution to tuning the conventional cost model for DBMS, with significant benefits in terms of reduced cost and improved performance.