Xuefeng Zhu

Xuefeng Zhu

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Xuefeng Zhu

Department of Medical Biochemistry and Cell Biology, University of Gothenburg, Medicinaregatan 9A, P.O. Box 440, 41390, Gothenburg, Sweden.

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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2 July 2021 in Science Advances
Verified
Journal Article
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MJMin Jiang
Min Jiang
XXXie Xie
Xie Xie
XZXuefeng Zhu
Xuefeng Zhu
SJShan Jiang
Shan Jiang
DMDusanka Milenkovic
Dusanka Milenkovic
MFMaria Falkenberg
Maria Falkenberg
The mitochondrial single-stranded DNA binding protein is required for initiation of DNA synthesis in mammalian cells.

23 May 2025 in Nature Communications
Verified
Journal Article
Open access
SCSamantha Corrà
Samantha Corrà
AZAlessandro Zuppardo
Alessandro Zuppardo
SVSebastian Valenzuela
Sebastian Valenzuela
LJLouise Jenninger
Louise Jenninger
RCRaffaele Cerutti
Raffaele Cerutti
Carlo ViscomiCarlo Viscomi
Carlo Viscomi
DNA polymerase γ (POLγ), responsible for mitochondrial DNA replication, consists of a catalytic POLγA subunit and two accessory POLγB subunits. Mutations in POLG, which encodes POLγA, lead to various mitochondrial diseases. We investigated the most common POLG mutations (A467T, W748S, G848S, Y955C) by characterizing human and mouse POLγ variants. Our data reveal that these mutations significantly impair POLγ activities, with mouse variants exhibiting milder defects. Cryogenic electron microscopy highlighted structural differences between human and mouse POLγ, particularly in the POLγB subunit, which may explain the higher activity of mouse POLγ and the reduced severity of mutations in mice. We further generated a panel of mouse models mirroring common human POLG mutations, providing crucial insights into the pathogenesis of POLG-related disorders and establishing robust models for therapeutic development. Our findings emphasize the importance of POLγB in modulating the severity of POLG mutations.

29 May 2020 in PLOS Genetics
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Journal Article
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QLQian Liu
Qian Liu
XZXuefeng Zhu
Xuefeng Zhu
MLMichelle Lindström
Michelle Lindström
YSYonghong Shi
Yonghong Shi
JZJu Zheng
Ju Zheng
BLBeidong Liu
Beidong Liu
Alterations in epigenetic silencing have been associated with ageing and tumour formation. Although substantial efforts have been made towards understanding the mechanisms of gene silencing, novel regulators in this process remain to be identified. To systematically search for components governing epigenetic silencing, we developed a genome-wide silencing screen for yeast (Saccharomyces cerevisiae) silent mating type locus HMR. Unexpectedly, the screen identified the mismatch repair (MMR) components Pms1, Mlh1, and Msh2 as being required for silencing at this locus. We further found that the identified genes were also required for proper silencing in telomeres. More intriguingly, the MMR mutants caused a redistribution of Sir2 deacetylase, from silent mating type loci and telomeres to rDNA regions. As a consequence, acetylation levels at histone positions H3K14, H3K56, and H4K16 were increased at silent mating type loci and telomeres but were decreased in rDNA regions. Moreover, knockdown of MMR components in human HEK293T cells increased subtelomeric DUX4 gene expression. Our work reveals that MMR components are required for stable inheritance of gene silencing patterns and establishes a link between the MMR machinery and the control of epigenetic silencing. During aging, gene silencing also decreases and it has been hypothesized that the collapse of epigenetic control networks may in part explain age-related diseases. For example, changes in epigenetic silencing are linked with different stages of tumor formation and progression. Great efforts have been made on investigating the mechanisms of establishment and maintenance silencing at silent mating cassettes in yeast. In this work, by applying a genome-wide silencing screening approach, we identified the conserved subunits of the mismatch repair (MMR) machinery (Pms1, Mlh1 and Msh2) as new components of the epigenetic silencing regulation machinery in yeast. We also found that depletion of mismatch repair subunits (Mlh1 and Msh2) led to impaired telomere-length related expression in mammalian cells. This indicates that these components probably have an evolutionarily conserved role on influencing gene silencing from yeast to humans. Further studies the functional roles of these MMR components on epigenetic silencing in mammalian model systems or relevant cancer patient samples will increase our understanding of MMR-related oncogenesis.

21 February 2023
Verified
Book Chapter
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XXXie Xie
Xie Xie
XZXuefeng Zhu
Xuefeng Zhu