Bryan He

Bryan He

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Bryan He

Department of Computer Science, Stanford University, Stanford, California, USA

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 March 2020 in Nature
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Journal Article
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DODavid Ouyang
David Ouyang
BHBryan He
Bryan He
AGAmirata Ghorbani
Amirata Ghorbani
NYNeal Yuan
Neal Yuan
JEJoseph E. Ebinger
Joseph E. Ebinger
JZJames Y Zou
James Y Zou

22 June 2020 in Nature Biomedical Engineering
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Journal Article
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BHBryan He
Bryan He
LBLudvig Bergenstråhle
Ludvig Bergenstråhle
LSLinnea Stenbeck
Linnea Stenbeck
AAAbubakar Abid
Abubakar Abid
AAAlma Andersson
Alma Andersson
JZJames Y Zou
James Y Zou

5 April 2023 in Nature
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Journal Article
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BHBryan He
Bryan He
AKAlan C. Kwan
Alan C. Kwan
JCJae Hyung Cho
Jae Hyung Cho
NYNeal Yuan
Neal Yuan
CPCharles Pollick
Charles Pollick
DODavid Ouyang
David Ouyang
Artificial intelligence (AI) has been developed for echocardiography1–3, although it has not yet been tested with blinding and randomization. Here we designed a blinded, randomized non-inferiority clinical trial (ClinicalTrials.gov ID: NCT05140642; no outside funding) of AI versus sonographer initial assessment of left ventricular ejection fraction (LVEF) to evaluate the impact of AI in the interpretation workflow. The primary end point was the change in the LVEF between initial AI or sonographer assessment and final cardiologist assessment, evaluated by the proportion of studies with substantial change (more than 5% change). From 3,769 echocardiographic studies screened, 274 studies were excluded owing to poor image quality. The proportion of studies substantially changed was 16.8% in the AI group and 27.2% in the sonographer group (difference of −10.4%, 95% confidence interval: −13.2% to −7.7%, P < 0.001 for non-inferiority, P < 0.001 for superiority). The mean absolute difference between final cardiologist assessment and independent previous cardiologist assessment was 6.29% in the AI group and 7.23% in the sonographer group (difference of −0.96%, 95% confidence interval: −1.34% to −0.54%, P < 0.001 for superiority). The AI-guided workflow saved time for both sonographers and cardiologists, and cardiologists were not able to distinguish between the initial assessments by AI versus the sonographer (blinding index of 0.088). For patients undergoing echocardiographic quantification of cardiac function, initial assessment of LVEF by AI was non-inferior to assessment by sonographers.

29 November 2021 in Nature Biotechnology
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LBLudvig Bergenstråhle
Ludvig Bergenstråhle
BHBryan He
Bryan He
JBJoseph Bergenstråhle
Joseph Bergenstråhle
XAXesús Abalo
Xesús Abalo
RMReza Mirzazadeh
Reza Mirzazadeh
JMJonas Maaskola
Jonas Maaskola

11 November 2025 in Nature
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MVMilos Vukadinovic
Milos Vukadinovic
ICI-Min Chiu
I-Min Chiu
XTXiu Tang
Xiu Tang
NYNeal Yuan
Neal Yuan
TCTien-Yu Chen
Tien-Yu Chen
DODavid Ouyang
David Ouyang
Echocardiography is the most widely used cardiac imaging modality, capturing ultrasound video data to assess cardiac structure and function1. Artificial intelligence (AI) in echocardiography has the potential to streamline manual tasks and improve reproducibility and precision2. However, most echocardiography AI models are single-view, single-task systems that do not synthesize complementary information from multiple views captured during a full exam3,4, and thus lead to limited performance and scope of applications. To address this problem, we introduce EchoPrime, a multi-view, view-informed, video-based vision-language foundation model trained on over 12 million video-report pairs. EchoPrime uses contrastive learning to train a unified embedding model for all standard views in a comprehensive echocardiogram study with representation of both rare and common diseases and diagnoses. EchoPrime then utilizes view-classification and a view-informed anatomic attention module to weight video-specific embeddings that accurately map the relationship between echocardiographic views and anatomical structures. With retrieval-augmented interpretation, EchoPrime integrates information from all echocardiogram videos in a comprehensive study and performs holistic clinical interpretation. In datasets from five international independent healthcare systems, EchoPrime achieves state-of-the art performance on 23 diverse benchmarks of cardiac form and function, surpassing the performance of both task-specific approaches and prior foundation models. Following rigorous clinical evaluation, EchoPrime can assist physicians in the automated preliminary assessment of comprehensive echocardiography.

22 December 2022 in npj Digital Medicine
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Journal Article
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GDGrant Duffy
Grant Duffy
SCShoa L. Clarke
Shoa L. Clarke
MCMatthew Christensen
Matthew Christensen
BHBryan He
Bryan He
NYNeal Yuan
Neal Yuan
DODavid Ouyang
David Ouyang
Deep learning has been shown to accurately assess “hidden” phenotypes from medical imaging beyond traditional clinician interpretation. Using large echocardiography datasets from two healthcare systems, we test whether it is possible to predict age, race, and sex from cardiac ultrasound images using deep learning algorithms and assess the impact of varying confounding variables. Using a total of 433,469 videos from Cedars-Sinai Medical Center and 99,909 videos from Stanford Medical Center, we trained video-based convolutional neural networks to predict age, sex, and race. We found that deep learning models were able to identify age and sex, while unable to reliably predict race. Without considering confounding differences between categories, the AI model predicted sex with an AUC of 0.85 (95% CI 0.84–0.86), age with a mean absolute error of 9.12 years (95% CI 9.00–9.25), and race with AUCs ranging from 0.63 to 0.71. When predicting race, we show that tuning the proportion of confounding variables (age or sex) in the training data significantly impacts model AUC (ranging from 0.53 to 0.85), while sex and age prediction was not particularly impacted by adjusting race proportion in the training dataset AUC of 0.81–0.83 and 0.80–0.84, respectively. This suggests significant proportion of AI’s performance on predicting race could come from confounding features being detected. Further work remains to identify the particular imaging features that associate with demographic information and to better understand the risks of demographic identification in medical AI as it pertains to potentially perpetuating bias and disparities.