Samuel Bosch

Samuel Bosch

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Samuel Bosch

Ocean Biogeographic Information System (OBIS), Intergovernmental Oceanographic Commission (IOC) of UNESCO, IOC Project Office for IODE, Oostende, Belgium

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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29 December 2017 in Global Ecology and Biogeography
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Journal Article
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JAJorge Assis
Jorge Assis
LTLennert Tyberghein
Lennert Tyberghein
SBSamuel Bosch
Samuel Bosch
HVHeroen Verbruggen
Heroen Verbruggen
ESEster Serrao
Ester Serrao
OCOlivier De Clerck
Olivier De Clerck

22 November 2017 in Diversity and Distributions
Verified
Journal Article
Open access
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SBSamuel Bosch
Samuel Bosch
LTLennert Tyberghein
Lennert Tyberghein
KDKlaas Deneudt
Klaas Deneudt
FHFrancisco Hernandez
Francisco Hernandez
OCOlivier De Clerck
Olivier De Clerck
Aim: Ideally, datasets for species distribution modelling (SDM) contain evenly sampled records covering the entire distribution of the species, confirmed absences and auxiliary ecophysiological data allowing informed decisions on relevant predictors. Unfortunately, these criteria are rarely met for marine organisms for which distributions are too often only scantly characterized and absences generally not recorded. Here, we investigate predictor relevance as a function of modelling algorithms and settings for a global dataset of marine species.Location: Global marine.Methods: We selected well‐studied and identifiable species from all major marine taxonomic groups. Distribution records were compiled from public sources (e.g., OBIS, GBIF, Reef Life Survey) and linked to environmental data from Bio‐ORACLE and MARSPEC. Using this dataset, predictor relevance was analysed under different variations of modelling algorithms, numbers of predictor variables, cross‐validation strategies, sampling bias mitigation methods, evaluation methods and ranking methods. SDMs for all combinations of predictors from eight correlation groups were fitted and ranked, from which the top five predictors were selected as the most relevant.Results: We collected two million distribution records from 514 species across 18 phyla. Mean sea surface temperature and calcite are, respectively, the most relevant and irrelevant predictors. A less clear pattern was derived from the other predictors. The biggest differences in predictor relevance were induced by varying the number of predictors, the modelling algorithm and the sample selection bias correction. The distribution data and associated environmental data are made available through the R package marinespeed and at http://marinespeed.org.Main conclusions: While temperature is a relevant predictor of global marine species distributions, considerable variation in predictor relevance is linked to the SDM set‐up. We promote the usage of a standardized benchmark dataset (MarineSPEED) for methodological SDM studies.


28 November 2023 in European Journal of Phycology
Verified
Journal Article
Closed access
LLLuna M. van der Loos
Luna M. van der Loos
QBQuinten Bafort
Quinten Bafort
SBSamuel Bosch
Samuel Bosch
EBEnric Ballesteros
Enric Ballesteros
IBIgnacio Bárbara
Ignacio Bárbara
OCOlivier De Clerck
Olivier De Clerck

1 January 2015 in Database: The Journal of Biological Databases and Curation
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Journal Article
Open access
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LVLeen Vandepitte
Leen Vandepitte
SBSamuel Bosch
Samuel Bosch
LTLennert Tyberghein
Lennert Tyberghein
FWFilip Waumans
Filip Waumans
BVBart Vanhoorne
Bart Vanhoorne
JMJan Mees
Jan Mees
Being able to assess the quality and level of completeness of data has become indispensable in marine biodiversity research, especially when dealing with large databases that typically compile data from a variety of sources. Very few integrated databases offer quality flags on the level of the individual record, making it hard for users to easily extract the data that are fit for their specific purposes. This article describes the different steps that were developed to analyse the quality and completeness of the distribution records within the European and international Ocean Biogeographic Information Systems (EurOBIS and OBIS). Records are checked on data format, completeness and validity of information, quality and detail of the used taxonomy and geographic indications and whether or not the record is a putative outlier. The corresponding quality control (QC) flags will not only help users with their data selection, they will also help the data management team and the data custodians to identify possible gaps and errors in the submitted data, providing scope to improve data quality. The results of these quality control procedures are as of now available on both the EurOBIS and OBIS databases. Through the Biology portal of the European Marine Observation and Data Network (EMODnet Biology), a subset of EurOBIS records—passing a specific combination of these QC steps—is offered to the users. In the future, EMODnet Biology will offer a wide range of filter options through its portal, allowing users to make specific selections themselves. Through LifeWatch, users can already upload their own data and check them against a selection of the here described quality control procedures. Database URL : www.eurobis.org ( www.iobis.org ; www.emodnet-biology.eu/ )

10 January 2018 in Biological Invasions
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Journal Article
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SVSofie Vranken
Sofie Vranken
SBSamuel Bosch
Samuel Bosch
VPViviana Peña
Viviana Peña
FLFrederik Leliaert
Frederik Leliaert
FMFrederic Mineur
Frederic Mineur
OCOlivier De Clerck
Olivier De Clerck