Joongku Lee

Joongku Lee

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Joongku Lee

Department of Environment and Forest Resources, College of Agricultural Life Science, Chungnam National University, Daejeon, South Korea

Research Focus & Metrics

Academic Career Length

32Years (1995-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2021 in BioMed Research International
Verified
Journal Article
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AGArun Bahadur Gurung
Arun Bahadur Gurung
AAAjmal Ali
Ajmal Ali
JLJoongku Lee
Joongku Lee
MFMOHAMMAD ABUL FARAH
MOHAMMAD ABUL FARAH
KAKhalid Mashay Alanzi
Khalid Mashay Alanzi
The recent outbreak of the deadly coronavirus disease 19 (COVID‐19) pandemic poses serious health concerns around the world. The lack of approved drugs or vaccines continues to be a challenge and further necessitates the discovery of new therapeutic molecules. Computer‐aided drug design has helped to expedite the drug discovery and development process by minimizing the cost and time. In this review article, we highlight two important categories of computer‐aided drug design (CADD), viz., the ligand‐based as well as structured‐based drug discovery. Various molecular modeling techniques involved in structure‐based drug design are molecular docking and molecular dynamic simulation, whereas ligand‐based drug design includes pharmacophore modeling, quantitative structure‐activity relationship (QSARs), and artificial intelligence (AI). We have briefly discussed the significance of computer‐aided drug design in the context of COVID‐19 and how the researchers continue to rely on these computational techniques in the rapid identification of promising drug candidate molecules against various drug targets implicated in the pathogenesis of severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2). The structural elucidation of pharmacological drug targets and the discovery of preclinical drug candidate molecules have accelerated both structure‐based as well as ligand‐based drug design. This review article will help the clinicians and researchers to exploit the immense potential of computer‐aided drug design in designing and identification of drug molecules and thereby helping in the management of fatal disease.

4 April 2018 in BMC Genomics
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LLLuxian Liu
Luxian Liu
YWYuewen Wang
Yuewen Wang
PHPeizi He
Peizi He
PLPan Li
Pan Li
JLJoongku Lee
Joongku Lee
CFCheng-Xin Fu
Cheng-Xin Fu
Epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae) have an epilithic habitat (rocky slopes) and a parapatric distribution in East Asia, which makes them an ideal model for a more comprehensive understanding of the demographic and divergence history and the influence of climate changes in East Asia. However, the genetic background and resources for these two genera are scarce. The complete chloroplast (cp) genomes of two Oresitrophe rupifraga and one Mukdenia rossii individuals were reconstructed and comparative analyses were conducted to examine the evolutionary pattern of chloroplast genomes in Saxifragaceae. The cp genomes ranged from 156,738 bp to 156,960 bp in length and had a typical quadripartite structure with a conserved genome arrangement. Comparative analysis revealed the intron of rpl2 has been lost in Heuchera parviflora, Tiarella polyphylla, M. rossii and O. rupifraga but presents in the reference genome of Penthorum chinense. Seven cp hotspot regions (trnH-psbA, trnR-atpA, atpI-rps2, rps2-rpoC2, petN-psbM, rps4-trnT and rpl33-rps18) were identified between Oresitrophe and Mukdenia, while four hotspots (trnQ-psbK, trnR-atpA, trnS-psbZ and rpl33-rps18) were identified within Oresitrophe. In addition, 24 polymorphic cpSSR loci were found between Oresitrophe and Mukdenia. Most importantly, we successfully developed 126 intergeneric polymorphic gSSR markers between Oresitrophe and Mukdenia, as well as 452 intrageneric ones within Oresitrophe. Twelve randomly selected intergeneric gSSRs have shown that these two genera exhibit a significant genetic structure. In this study, we conducted genome skimming for Oresitrophe rupifraga and Mukdenia rossii. Using these data, we were able to not only assemble their complete chloroplast genomes, but also develop abundant genetic resources (cp hotspots, cpSSRs, polymorphic gSSRs). The genomic patterns and genetic resources presented here will contribute to further studies on population genetics, phylogeny and conservation biology in Saxifragaceae.

1 May 2016 in Colloids and Surfaces B: Biointerfaces
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MFMOHAMMAD ABUL FARAH
MOHAMMAD ABUL FARAH
AAAjmal Ali
Ajmal Ali
SCShen-Ming Chen
Shen-Ming Chen
YLYing Li
Ying Li
FAFahad Mohammad Al-Hemaid
Fahad Mohammad Al-Hemaid
JLJoongku Lee
Joongku Lee

3 June 2009 in New Phytologist
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Journal Article
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YQYing‐Xiong Qiu
Ying‐Xiong Qiu
YSYi Sun
Yi Sun
XZXiao‐Ping Zhang
Xiao‐Ping Zhang
JLJoongku Lee
Joongku Lee
CFCheng-Xin Fu
Cheng-Xin Fu
HCHans Peter Comes
Hans Peter Comes
• Kirengeshoma comprises two species inhabiting warm temperate‐deciduous forests in East China/South Japan (Kirengeshoma palmata) and South Korea (Kirengeshoma koreana). A survey of chloroplast (cp) DNA and inter‐simple sequence repeats (ISSRs) variation in Kirengeshoma was carried out to determine the population history of a plant taxon around the East China Sea (ECS). • CpDNA and ISSRs revealed lower genetic divergence between China and Japan relative to the other contrasts, in line with intrageneric classification. Molecular dating suggests that K. koreana diverged at the Plio‐Pleistocene boundary from the Japanese populations, whereas the latter migrated into China during the early‐to‐mid Pleistocene via the ECS basin. Vicariant segregation of Chinese and Japanese populations likely occurred during the mid‐Pleistocene. • Mismatch distributions and neutrality tests indicated that Chinese populations expanded their range during the Late Pleistocene, probably during a cold period, whereas those from Japan showed no significant population growth. • We conclude that the current distribution and differentiation of components of presently isolated warm temperate‐deciduous forests in China, Japan and Korea likely resulted from a combination of relatively ancient vicariant and immigration events, and those from Japan were particularly sensitive to range fragmentation and long‐term refugial isolation throughout the Late Pleistocene.

1 July 2014 in Saudi Journal of Biological Sciences
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Journal Article
Open access
AAAjmal Ali
Ajmal Ali
GGGábor Gyulai
Gábor Gyulai
NHNorbert Hidvégi
Norbert Hidvégi
BKBalázs Kerti
Balázs Kerti
FAFahad M. Al-Hemaid
Fahad M. Al-Hemaid
JLJoongku Lee
Joongku Lee
The discipline taxonomy (the science of naming and classifying organisms, the original bioinformatics and a basis for all biology) is fundamentally important in ensuring the quality of life of future human generation on the earth; yet over the past few decades, the teaching and research funding in taxonomy have declined because of its classical way of practice which lead the discipline many a times to a subject of opinion, and this ultimately gave birth to several problems and challenges, and therefore the taxonomist became an endangered race in the era of genomics. Now taxonomy suddenly became fashionable again due to revolutionary approaches in taxonomy called DNA barcoding (a novel technology to provide rapid, accurate, and automated species identifications using short orthologous DNA sequences). In DNA barcoding, complete data set can be obtained from a single specimen irrespective to morphological or life stage characters. The core idea of DNA barcoding is based on the fact that the highly conserved stretches of DNA, either coding or non coding regions, vary at very minor degree during the evolution within the species. Sequences suggested to be useful in DNA barcoding include cytoplasmic mitochondrial DNA (e.g. cox1) and chloroplast DNA (e.g. rbcL, trnL-F, matK, ndhF, and atpB rbcL), and nuclear DNA (ITS, and house keeping genes e.g. gapdh). The plant DNA barcoding is now transitioning the epitome of species identification; and thus, ultimately helping in the molecularization of taxonomy, a need of the hour. The 'DNA barcodes' show promise in providing a practical, standardized, species-level identification tool that can be used for biodiversity assessment, life history and ecological studies, forensic analysis, and many more.

27 October 2009 in Proceedings of the National Academy of Sciences
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Journal Article
Closed access
WAW. Scott Armbruster
W. Scott Armbruster
JLJoongku Lee
Joongku Lee
BBBruce G. Baldwin
Bruce G. Baldwin
We conducted phylogenetically informed comparative analyses of 81 taxa ofDalechampia(Euphorbiaceae) vines and shrubs to assess the roles of historical contingency and trait interaction in the evolution of plant-defense and pollinator-attraction systems. We asked whether defenses can originate by exaptation from preexisting pollinator attractants, or vice versa, whether plant defenses show escalation, and if so, whether by enhancing one line of defense or by adding new lines of defense. Two major patterns emerged: (i) correlated evolution of several complementary lines of defense of flowers, seeds, and leaves, and (ii) 5 to 6 losses of the resin reward, followed by redeployment of resin for defense of male flowers in 3 to 4 lineages, apparently in response to herbivore-mediated selection for defense of staminate flowers upon relaxation of pollinator-mediated selection on resin. In all cases, redeployment of resin involved reversion to the inferred ancestral arrangement of flowers and resiniferous bractlets. Triterpene resin has also been deployed for defense of leaves and developing seeds. Other unique defenses against florivores include nocturnal closure of large involucral bracts around receptive flowers and permanent closure around developing fruits (until opening again upon dehiscence). Escalation in one major clade occurred through an early dramatic increase in the number of lines of defense and in the other major clade by more limited increases throughout the group's evolution. We conclude that preaptations played important roles in the evolution of unique defense and attraction systems, and that the evolution of interactions with herbivores can be influenced by adaptations for pollination, and vice versa.