Background: The combination of chronic obstructive pulmonary disease (COPD) and tuberculosis forms a specific clinical and pathogenetic phenotype. Studying the cytokine profile in comorbid pathology is necessary to understand the mechanisms of mutual aggravation of disease course. Aim: To assess the strength of association between serum levels of key cytokines and clinically significant manifestations of comorbid COPD and tuberculosis, with a primary focus on the presence of bacterial shedding. Methods: A single-center observational comparative cross-sectional study was conducted. From December 2024 to March 2026, clinical and laboratory parameters, serum cytokine levels, and the presence of Mycobacterium tuberculosis in sputum were evaluated in men aged 45 years and older followed up in pulmonology and phthisiology departments for COPD, pulmonary tuberculosis, or their combination, as well as in healthy volunteers in the control group. Serum levels of interleukin (IL)-1β, IL-6, IL-8, IL-10, and tumor necrosis factor-α (TNF-α) were measured by enzyme-linked immunosorbent assay. Mycobacterium tuberculosis (MTB) isolation was assessed by sputum smear microscopy, fluorescent microscopy and/or sputum culture. Patients with a positive result were classified as MTB+, while those without confirmed bacterial shedding were classified as MTB-. Results: Data from 209 men were analyzed: 42 healthy volunteers (control group); 63 patients with COPD without active tuberculosis (COPD group); 51 patients with active pulmonary tuberculosis without comorbid COPD (TB group); and 53 patients with both COPD and active pulmonary tuberculosis (COPD + TB group). Median age across groups ranged from 64 to 69 years (p = 0.137). The groups differed significantly in smoking history, forced expiratory volume in 1 second (FEV1), oxygen saturation (SpO2), and markers of systemic inflammation. The comorbid group (COPD + TB) had the highest smoking history (median 31 pack-years), lowest FEV1 (41.3% of predicted), highest C-reactive protein (32.7 mg/L), and lowest SpO2 (90%) (all p 0.001). Levels of all five cytokines increased from the control group to the comorbid group (COPD + TB): median IL-6 from 6.3 to 51.7 pg/mL, IL-1β from 3.1 to 27.1 pg/mL, IL-8 from 18.4 to 66.0 pg/mL (all p 0.001). In bacterial shedders (MTB+, n = 59), cytokine levels were higher than in patients without bacterial shedding (MTB-, n = 45): IL-1β, 32.9 vs 13.2 pg/mL; IL-10, 29.1 vs 13.4 pg/mL; TNF-α, 30.0 vs 15.3 pg/mL (all p 0.001). The best discriminative ability for bacterial shedding was shown by IL-10 (AUC = 0.924) and TNF-α (AUC = 0.923). A multivariate logistic model including IL-1β, IL-6, TNF-α and the IL-6/IL-10 ratio demonstrated an in-sample AUC of 0.991 (95% confidence interval 0.979–1.000), and 0.974 (SD 0.009) after cross-validation. Conclusion: Serum cytokine levels are strongly associated with bacterial shedding. The cytokine profile may be considered as a research tool for stratifying the inflammatory phenotype in combined COPD and pulmonary tuberculosis.