Eva Pluhařová

Eva Pluhařová

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Eva Pluhařová

Heyrovsky Institute Czech Academy of Sciences Prague Czech Republic

Research Focus & Metrics

Academic Career Length

19Years (2008-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 April 2013 in The Journal of Physical Chemistry A
Verified
Journal Article
Closed access
EPEva Pluhařová
Eva Pluhařová
PMPhilip E. Mason
Philip E. Mason
PJPavel Jungwirth
Pavel Jungwirth

6 March 2018 in The Journal of Chemical Physics
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Journal Article
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TMTomas Martinek
Tomas Martinek
EDElise Duboué-Dijon
Elise Duboué-Dijon
ŠTŠtěpán Timr
Štěpán Timr
PMPhilip E. Mason
Philip E. Mason
KBKatarina Baxová
Katarina Baxová
PJPavel Jungwirth
Pavel Jungwirth
We present a combination of force field and ab initio molecular dynamics simulations together with neutron scattering experiments with isotopic substitution that aim at characterizing ion hydration and pairing in aqueous calcium chloride and formate/acetate solutions. Benchmarking against neutron scattering data on concentrated solutions together with ion pairing free energy profiles from ab initio molecular dynamics allows us to develop an accurate calcium force field which accounts in a mean-field way for electronic polarization effects via charge rescaling. This refined calcium parameterization is directly usable for standard molecular dynamics simulations of processes involving this key biological signaling ion.

12 December 2011 in The Journal of Chemical Physics
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Journal Article
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OMOndrej Marsalek
Ondrej Marsalek
CEChristopher G. Elles
Christopher G. Elles
PPPiotr A. Pieniazek
Piotr A. Pieniazek
EPEva Pluhařová
Eva Pluhařová
JVJoost VandeVondele
Joost VandeVondele
PJPavel Jungwirth
Pavel Jungwirth
The ultrafast dynamics of the cationic hole formed in bulk liquid water following ionization is investigated by ab initio molecular dynamics simulations and an experimentally accessible signature is suggested that might be tracked by femtosecond pump-probe spectroscopy. This is one of the fastest fundamental processes occurring in radiation-induced chemistry in aqueous systems and biological tissue. However, unlike the excess electron formed in the same process, the nature and time evolution of the cationic hole has been hitherto little studied. Simulations show that an initially partially delocalized cationic hole localizes within ∼30 fs after which proton transfer to a neighboring water molecule proceeds practically immediately, leading to the formation of the OH radical and the hydronium cation in a reaction which can be formally written as H2O+ + H2O → OH + H3O+. The exact amount of initial spin delocalization is, however, somewhat method dependent, being realistically described by approximate density functional theory methods corrected for the self-interaction error. Localization, and then the evolving separation of spin and charge, changes the electronic structure of the radical center. This is manifested in the spectrum of electronic excitations which is calculated for the ensemble of ab initio molecular dynamics trajectories using a quantum mechanics/molecular mechanics (QM/MM) formalism applying the equation of motion coupled-clusters method to the radical core. A clear spectroscopic signature is predicted by the theoretical model: as the hole transforms into a hydroxyl radical, a transient electronic absorption in the visible shifts to the blue, growing toward the near ultraviolet. Experimental evidence for this primary radiation-induced process is sought using femtosecond photoionization of liquid water excited with two photons at 11 eV. Transient absorption measurements carried out with ∼40 fs time resolution and broadband spectral probing across the near-UV and visible are presented and direct comparisons with the theoretical simulations are made. Within the sensitivity and time resolution of the current measurement, a matching spectral signature is not detected. This result is used to place an upper limit on the absorption strength and/or lifetime of the localized H2O+(aq) species.

25 July 2012 in The Journal of Physical Chemistry Letters
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Journal Article
Closed access
MVMario Vazdar
Mario Vazdar
EPEva Pluhařová
Eva Pluhařová
PMPhil E. Mason
Phil E. Mason
RVRobert Vácha
Robert Vácha
PJPavel Jungwirth
Pavel Jungwirth

4 March 2015 in Accounts of Chemical Research
Verified
Journal Article
Closed access
EPEva Pluhařová
Eva Pluhařová
PSPetr Slavíček
Petr Slavíček
PJPavel Jungwirth
Pavel Jungwirth

19 January 2011 in The Journal of Physical Chemistry B
Verified
Journal Article
Closed access
EPEva Pluhařová
Eva Pluhařová
PJPavel Jungwirth
Pavel Jungwirth
SBStephen E. Bradforth
Stephen E. Bradforth
PSPetr Slavíček
Petr Slavíček