Background: Gibberellic acid (GA; or gibberellin) affects the development of floral organs, especially anthers and pollen, and perturbation of development of male floral organs can cause sterility. Many studies of GA signaling have concentrated on anther development, but the effect of GA on grain production remains to be examined.Results: Using a cross of ‘Milyang23 (M23)’, which has a functional allele ofEarly flowering1(EL1), and ‘H143’, which has a nonfunctionalel1allele, we generated heterogeneous inbred family-near isogenic lines (HNILs) that are homozygous forEL1[HNIL(M23)] orel1[HNIL(H143)]. Here, we found that HNIL(H143) exhibited anther deformities and low pollen viability. The expression ofGAMYB, a major activator of GA signaling, and its downstream genesCYP703A3andKAR, mainly involved in pollen formation, increased abnormally during spikelet development; this activation of GA signaling may cause the sterility. To confirm the negative effect of theel1mutation on spikelet fertility, we examined a line carrying a T-DNA insertionel1mutant [hereafter ZH11(el1)] and its parental cultivar ‘Zhonghua11 (ZH11)’. ZH11(el1) showed nearly identical defects in anther development and pollen viability as HNIL(H143), leading to decreased seed setting rate. However, the elitejaponicacultivar Koshihikari, which has a nonfunctionalel1allele for early flowering in long days, produces fertile spikelets and normal grain yields, like other elitejaponicacultivars. This indicates that as-yet-unknown regulator(s) that can overcome the male sterile phenotype of theel1mutation must have been introduced into Koshihikari.Conclusions: Theel1mutation contributes to early flowering injaponicarice under long days but fails to limit GA signaling, thus negatively affecting spikelet fertility, which results in a loss of grain yield. Thus,EL1is essential for photoperiod sensitivity in flowering as well as spikelet fertility in grain production.