Nageen Zahra

Nageen Zahra

Auto-generated profile, based on publicly available information

Nageen Zahra

National Institute for Genomics and Advanced Biotechnology (NIGAB), NARC, Islamabad, Pakistan

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
11 May 2022 in Agronomy
Verified
Journal Article
Open access
PDF file
Imdad Ullah ZaidImdad Ullah Zaid
Imdad Ullah Zaid
NZNageen Zahra
Nageen Zahra
MHMadiha Habib
Madiha Habib
MNMuhammad Kashif` Naeem
Muhammad Kashif` Naeem
UAUmair Asghar
Umair Asghar
MKMuhammad Ramzan Khan
Muhammad Ramzan Khan
Identifying adopted Green Super Rice (GSR) under different agro-ecological locations in Pakistan is crucial to sustaining the high productivity of rice. For this purpose, the multi-location trials of GSR were conducted to evaluate the magnitude of genetic variability, heritability, and stability in eight different locations in Pakistan. The experimental trial was laid out in a randomized complete block (RCB) design with three replications at each location. The combined analysis of variance (ANOVA) manifested significant variations for tested genotypes (g), locations (L), years (Y), genotype × year (GY), and genotype × location (GL) interactions revealing the influence of environmental factors (L and Y) on yield traits. High broad-sense heritability estimates were observed for all the studied traits representing low environmental influence over the expression of traits. Noticeably, GSR 48 showed maximum stability than all other lines in the univariate model across the two years for grain yield and related traits data. Multivariate stability analysis characterized GSR 305 and GSR 252 as the highest yielding with optimum stability across the eight tested locations. Overall, Narowal, Muzaffargarh, and Swat were the most stable locations for GSR cultivation in Pakistan. In conclusion, this study revealed that G×E interactions were an important source of rice yield variation, and its AMMI and biplots analysis are efficient tools for visualizing the response of genotypes to different locations.

30 May 2022 in Plants
Verified
Journal Article
Open access
PDF file
MAMuhammad Ammar Amanat
Muhammad Ammar Amanat
MNMuhammad Kashif` Naeem
Muhammad Kashif` Naeem
HAHussah I.M. AlGwaiz
Hussah I.M. AlGwaiz
Muhammad UzairMuhammad Uzair
Muhammad Uzair
KAKotb A. Attia
Kotb A. Attia
MKMuhammad Ramzan Khan
Muhammad Ramzan Khan
Rice (Oryza sativa) is an important staple food crop worldwide, especially in east and southeast Asia. About one-third of rice cultivated area is under saline soil, either natural saline soils or irrigation with brackish water. Salinity stress is among the devastating abiotic stresses that not only affect rice growth and crop productivity but also limit its cultivation area globally. Plants adopt multiple tolerance mechanisms at the morphological, physiological, and biochemical levels to tackle salinity stress. To identify these tolerance mechanisms, this study was carried out under both a controlled glass house as well as natural saline field conditions using 22 green super rice (GSR) lines along with two local varieties (“IRRI 6 and Kissan Basmati”). Several morpho-physiological and biochemical parameters along with stress-responsive genes were used as evaluation criteria under normal and salinity stress conditions. Correlation and Principal Component Analysis (PCA) suggested that shoot-related parameters and the salt susceptible index (SSI) can be used for the identification of salt-tolerant genotypes. Based on Agglomerative Hierarchical Cluster (AHC) analysis, two saline-tolerant (“S19 and S20”) and saline-susceptible (“S3 and S24”) lines were selected for further molecular evaluation. Quantitative RT-PCR was performed, and results showed that expression of 1-5-phosphoribosyl -5-5-phosphoribosyl amino methylidene amino imidazole-4-carboxamide isomerase, DNA repair protein recA, and peptide transporter PTR2 related genes were upregulated in salt-tolerant genotypes, suggesting their potential role in salinity tolerance. However, additional validation using reverse genetics approaches will further confirm their specific role in salt tolerance. Identified saline-tolerant lines in this study will be useful genetic resources for future salinity breeding programs.

14 August 2022 in Agronomy
Verified
Journal Article
Open access
PDF file
SZSyed Adeel Zafar
Syed Adeel Zafar
MAMuhammad Hamza Arif
Muhammad Hamza Arif
Muhammad UzairMuhammad Uzair
Muhammad Uzair
URUmer Rashid
Umer Rashid
MNMuhammad Kashif` Naeem
Muhammad Kashif` Naeem
MKMuhammad Ramzan Khan
Muhammad Ramzan Khan
Optimum growing temperature is necessary for maximum yield-potential in any crop. The global atmospheric temperature is changing more rapidly and irregularly every year. High temperature at the flowering/reproductive stage in rice causes partial to complete pollen sterility, resulting in significant reduction in grain yield. Green Super Rice (GSR) is an effort to develop an elite rice type that can withstand multiple environmental stresses and maintain yield in different agro-ecological zones. The current study was performed to assess the effect of heat stress on agronomic and physiological attributes of GSR at flowering stage. Twenty-two GSR lines and four local checks were evaluated under normal and heat-stress conditions for different agro-physiological parameters, including plant height (PH), tillers per plant (TPP), grain yield per plant (GY), straw yield per plant (SY), harvest index (HI), 1000-grain weight (GW), grain length (GL), cell membrane stability (CMS), normalized difference vegetative index (NDVI), and pollen fertility percentage (PFP). Genotypes showed high significant variations for all the studied parameters except NDVI. Association and principal component analysis (PCA) explained the genetic diversity of the genotypes, and relationship between the particular parameters and grain yield. We found that GY, along with other agronomic traits, such as TPP, SY, HI, and CMS, were greatly affected by heat stress in most of the genotypes, while PH, GW, GL, PFP, and NDVI were affected only in a few genotypes. Outperforming NGSR-16 and NGSR-18 in heat stress could be utilized as a parent for the development of heat-tolerant rice. Moreover, these findings will be helpful in the prevention and management of heat stress in rice.

10 March 2022 in Genes
Verified
Journal Article
Open access
PDF file
HAHina Abbas
Hina Abbas
MNMuhammad Kashif` Naeem
Muhammad Kashif` Naeem
MRMarya Rubab
Marya Rubab
Emilie WidemannEmilie Widemann
Emilie Widemann
Muhammad UzairMuhammad Uzair
Muhammad Uzair
SSSarfraz Shafiq
Sarfraz Shafiq
The wheat plant requires elevated phosphorus levels for its normal growth and yield, but continuously depleting non-renewable phosphorus reserves in the soil is one of the biggest challenges in agricultural production worldwide. The Phosphorus Starvation Tolerance 1 (PSTOL1) gene has been reported to play a key role in efficient P uptake, deeper rooting, and high yield in rice. However, the function of the PSTOL1 gene in wheat is still unclear. In this study, a total of 22 PSTOL1 orthologs were identified in the wheat genome, and found that wheat PSTOL1 orthologs are unevenly distributed on chromosomes, and these genes were under strong purifying selection. Under different phosphorus regimes, wheat PSTOL1 genes showed differential expression patterns in different tissues. These results strengthen the classification of Pakistan-13 as a P-efficient cultivar and Shafaq-06 as a P-inefficient cultivar. Phenotypic characterization demonstrated that Pakistan-13 wheat cultivar has significantly increased P uptake, root length, root volume, and root surface area compared to Shafaq-06. Some wheat PSTOL1 orthologs are co-localized with phosphorus starvation’s related quantitative trait loci (QTLs), suggesting their potential role in phosphorus use efficiency. Altogether, these results highlight the role of the wheat PSTOL1 genes in wheat P uptake, root architecture, and efficient plant growth. This comprehensive study will be helpful for devising sustainable strategies for wheat crop production and adaptation to phosphorus insufficiency.

18 December 2023 in Molecular Biology Reports
Verified
Journal Article
Closed access
PDF file
NZNageen Zahra
Nageen Zahra
Muhammad UzairMuhammad Uzair
Muhammad Uzair
Imdad Ullah ZaidImdad Ullah Zaid
Imdad Ullah Zaid
KAKotb A. Attia
Kotb A. Attia
SISafeena Inam
Safeena Inam
MKMuhammad Ramzan Khan
Muhammad Ramzan Khan