Nestor N. Jimenez-Vargas

Nestor N. Jimenez-Vargas

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Nestor N. Jimenez-Vargas

Molecular Pathobiology, New York University, New York, New York, USA

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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27 July 2022 in Science Translational Medicine
Verified
Journal Article
Closed access
GPGiada De Palma
Giada De Palma
CSChiko Shimbori
Chiko Shimbori
DRDavid E. Reed
David E. Reed
YYYang Yu
Yang Yu
VRVirginia Rabbia
Virginia Rabbia
PBPremysl Bercik
Premysl Bercik
The gut microbiota has been implicated in chronic pain disorders, including irritable bowel syndrome (IBS), yet specific pathophysiological mechanisms remain unclear. We showed that decreasing intake of fermentable carbohydrates improved abdominal pain in patients with IBS, and this was accompanied by changes in the gut microbiota and decreased urinary histamine concentrations. Here, we used germ-free mice colonized with fecal microbiota from patients with IBS to investigate the role of gut bacteria and the neuroactive mediator histamine in visceral hypersensitivity. Germ-free mice colonized with the fecal microbiota of patients with IBS who had high but not low urinary histamine developed visceral hyperalgesia and mast cell activation. When these mice were fed a diet with reduced fermentable carbohydrates, the animals showed a decrease in visceral hypersensitivity and mast cell accumulation in the colon. We observed that the fecal microbiota from patients with IBS with high but not low urinary histamine produced large amounts of histamine in vitro. We identified Klebsiella aerogenes , carrying a histidine decarboxylase gene variant, as a major producer of this histamine. This bacterial strain was highly abundant in the fecal microbiota of three independent cohorts of patients with IBS compared with healthy individuals. Pharmacological blockade of the histamine 4 receptor in vivo inhibited visceral hypersensitivity and decreased mast cell accumulation in the colon of germ-free mice colonized with the high histamine-producing IBS fecal microbiota. These results suggest that therapeutic strategies directed against bacterial histamine could help treat visceral hyperalgesia in a subset of patients with IBS with chronic abdominal pain.

13 December 2022 in Gut
Verified
Journal Article
Closed access
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CTCaroline Tuck
Caroline Tuck
AOAmal Abu Omar
Amal Abu Omar
GPGiada De Palma
Giada De Palma
SOSamira Osman
Samira Osman
NJNestor N Jiménez-Vargas
Nestor N Jiménez-Vargas
DRDavid E Reed
David E Reed
Objective Dietary therapies for irritable bowel syndrome (IBS) have received increasing interest but predicting which patients will benefit remains a challenge due to a lack of mechanistic insight. We recently found evidence of a role for the microbiota in dietary modulation of pain signalling in a humanised mouse model of IBS. This randomised cross-over study aimed to test the hypothesis that pain relief following reduced consumption of fermentable carbohydrates is the result of changes in luminal neuroactive metabolites. Design IBS (Rome IV) participants underwent four trial periods: two non-intervention periods, followed by a diet low (LFD) and high in fermentable carbohydrates for 3 weeks each. At the end of each period, participants completed questionnaires and provided stool. The effects of faecal supernatants (FS) collected before (IBS FS) and after a LFD (LFD FS) on nociceptive afferent neurons were assessed in mice using patch-clamp and ex vivo colonic afferent nerve recording techniques. Results Total IBS symptom severity score and abdominal pain were reduced by the LFD (N=25; p<0.01). Excitability of neurons was increased in response to IBS FS, but this effect was reduced (p<0.01) with LFD FS from pain-responders. IBS FS from pain-responders increased mechanosensitivity of nociceptive afferent nerve axons (p<0.001), an effect lost following LFD FS administration (p=NS) or when IBS FS was administered in the presence of antagonists of histamine receptors or protease inhibitors. Conclusions In a subset of IBS patients with improvement in abdominal pain following a LFD, there is a decrease in pronociceptive signalling from FS, suggesting that changes in luminal mediators may contribute to symptom response.

7 October 2025 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Open access
STShavonne L. Teng
Shavonne L. Teng
RLRocco Latorre
Rocco Latorre
DBDivya Bhansali
Divya Bhansali
PLParker K. Lewis
Parker K. Lewis
RPRachel E. Pollard
Rachel E. Pollard
NBNigel W. Bunnett
Nigel W. Bunnett
Although many internalized G protein-coupled receptors (GPCRs) continue to signal, the mechanisms and outcomes of intracellular GPCR signaling are uncertain due to the challenges of measuring organelle-specific signals and of selectively antagonizing receptors in intracellular compartments. Herein, genetically encoded biosensors targeted to the plasma membrane and early endosomes were used to analyze compartmentalized signaling of protease-activated receptor 2 (PAR 2 ); the propensity of nanoparticles (NPs) to accumulate in endosomes was leveraged to preferentially antagonize intracellular PAR 2 signaling of pain. PAR 2 agonists evoked sustained activation of PAR 2 , Gαq, and β-arrestin-1 in early endosomes and activated extracellular signal regulated kinase (ERK) in the cytosol and nucleus, measured with targeted biosensors. Fluorescent dendrimer and core-shell polymeric NPs accumulated in endosomes of HEK293T cells, colonic epithelial cells, and nociceptors, detected by confocal microscopy. NPs efficiently encapsulated and slowly released AZ3451, a negative allosteric PAR 2 modulator. NP-encapsulated AZ3451, but not unencapsulated AZ3451, rapidly and completely reversed PAR 2 , Gαq, and β-arrestin-1 activation in early endosomes and ERK activation in the cytosol and nucleus. When administered into the mouse colon lumen, fluorescent dendrimer NPs accumulated in endosomes of colonocytes and polymeric NPs accumulated in neurons, sites of PAR 2 expression. Both NP formulations of AZ3451, but not unencapsulated AZ3451, caused long-lasting analgesia and normalized aberrant behavior in preclinical models of inflammatory bowel disease. These results provide evidence that PAR 2 endosomal signaling mediates pain and that nanomedicines that antagonize PAR 2 in endosomes effectively relieve pain. NP-mediated delivery may improve the efficacy of other GPCR antagonists for treatment of diverse diseases.

8 February 2023 in Nature Reviews Gastroenterology & Hepatology
Verified
Journal Article
Closed access
PDF file
MGMabel Guzman
Mabel Guzman
GCGisela Canedo-Marroquin
Gisela Canedo-Marroquin
NJNestor N. Jimenez-Vargas
Nestor N. Jimenez-Vargas

1 March 2021 in Journal of the Canadian Association of Gastroenterology
Verified
Journal Article
Open access
PDF file
YYY Yu
Y Yu
NJN N Jiménez-Vargas
N N Jiménez-Vargas
QTQ K Tsang
Q K Tsang
CLC Lopez Lopez
C Lopez Lopez
JPJ Jaramillo Polanco
J Jaramillo Polanco
SVS Vanner
S Vanner
Opioid drugs are used to treat pain in inflammatory bowel disease (IBD) but their side effects can cause serious morbidity. Therefore, we tested a novel opioid analgesic, ±)-N-(3-fluoro-1-phenethylpiperidine-4-yl)-N-phenylpropionamide (NFEPP) which selectively activates peripheral µ-opioid receptors at acidic pH, as occurs in inflamed tissue. Evaluate whether NFEPP causes analgesia in the inflamed colon of DSS-colitis mice using both in vitro and in vivo techniques. To measure the visceral motor reflex (VMR) in response to colorectal distention, EMG electrodes connected to a telemetric transmitter were implanted in mice (c57BL/6), after 10 days recovery acute dextran sodium sulfate (DSS) colitis was induced (5 days 2.5% DSS, 2 days water). VMR was measured 30 min after s.c. injection of vehicle or 0.2 mg/kg of NFEPP or fentanyl. Motility was assessed by fecal pellet count 1 hour after NFEPP. Colonic tissue pH was evaluated using the SNARF-4F-5 carboxylic acid probe. Excitability of mouse dorsal root ganglia (DRG) neurons was measured by recording the rheobase (minimum input current to fire an action potential) after superfusion of NFEPP (300 nM, 10 min) or vehicle at pH 6.5 or 7.4. Colonic afferent nerve responses to probing with a von Frey filament (1 gm) were examined before and after exposure to NFEPP (300 nM, 5 min superfusion) at pH 6.5 and 7.4 respectively. The data was analyzed with Welch’s t-test, 1- or 2-way ANOVA with post hoc Dunnett or Bonferroni or Tukey’s test. NFEPP significantly inhibited the VMR in response to distension in mice with colitis compared to vehicle (decreased response by 65%, P<0.001). NFEPP had no effect in control mice. Conversely, fentanyl caused a similar decreased response in both groups (DSS 79% and control 67%, P<0.001). Pelleting was not affected by NFEPP injection in either group compared to vehicle. The pH measurement revealed a more acidic environment in DSS colonic tissue (ΔpH0.37±0.14, P<0.05) compared to controls. In patch-clamp studies, NFEPP decreased DRG excitability at pH 6.5 compared to the baseline and vehicle (increased rheobase 53.84%, P<0.01 and 36.36%, P<0.05 respectively) but had no effect at pH 7.4. In colonic afferent nerve recordings, NFEPP significantly attenuated afferent responses (28.9% P<0.01) to probing at pH 6.5 but also had no effect at pH 7.4. This pH-selective opioid agonist significantly inhibits pain at the site of inflammation where the tissue pH is acidic but has no effect in tissues where the pH is in the physiological range. Thus, NFEPP could be an effective opioid analgesic in IBD while being devoid of any unwanted side effects. CCC

19 May 2026 in Gut
Verified
Journal Article
Closed access
NJNestor N Jimenez-Vargas
Nestor N Jimenez-Vargas
BSBadr Sokrat
Badr Sokrat
DGDaniella A Gilmor
Daniella A Gilmor
MFMaria F P Fialho
Maria F P Fialho
MGMabel Guzman-Rodriguez
Mabel Guzman-Rodriguez
NBNigel W Bunnett
Nigel W Bunnett
Background: Proteases and histamine, co-secreted by mast cells and bacteria, sensitise colonic nociceptors and contribute to irritable bowel syndrome (IBS) pain. Objective: To determine whether irreversible proteolytic cleavage of protease-activated receptor-2 (PAR 2 ) and its continued activity in endosomes amplify and sustain otherwise transient pronociceptive actions of histamine receptors to cause recurrent pain, the defining symptom of IBS. Design: We investigated PAR 2 and H 1 R coexpression in nociceptors using RNAscope and assessed the consequences of coactivation using electrophysiological assays of nociceptor sensitisation and biophysical measurements of receptor and effector activity. Results: PAR 2 and H 1 R were co-expressed by human and mouse dorsal root ganglion nociceptors. Intracolonic infusion of faecal supernatants from patients with IBS with elevated histamine and proteolytic activity enhanced mechanosensitivity of colonic nociceptors in mice. Antagonists of PAR 2 or H 1 R abolished this response. Combined administration of subthreshold concentrations of trypsin and histamine replicated the effects of faecal supernatant and caused hyperexcitability of isolated nociceptors. Pre-activation with trypsin sensitised histamine-induced hyperexcitability in nociceptors from wild-type but not Par 2 −/− mice. Endocytosis inhibitors prevented this hypersensitivity, consistent with sustained endosomal signalling of PAR 2 and persistent nociceptor hyperexcitability. Trypsin amplified histamine-induced activation of H 1 R and β-arrestin2 and Gαq effectors at the plasmalemma and in endosomes. Conversely, histamine did not sensitise trypsin-induced hyperexcitability of neurons, in line with the inability of histamine to induce sustained nociceptor hypersensitivity. Conclusions: By amplifying and maintaining the otherwise transient actions of H 1 R and possibly other pain receptors, persistent PAR 2 endosomal signalling makes a dominant contribution to IBS-related colonic pain.