Basir Ahmad

Basir Ahmad

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Basir Ahmad

Protein Assembly Laboratory, Department of Medical Elementology and Toxicology, School of Chemical and Life Sciences, Jamia Hamdard, New Delhi 110062, India

Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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28 February 2006 in Biomacromolecules
Verified
Journal Article
Closed access
BABasir Ahmad
Basir Ahmad
SPSuphiya Parveen
Suphiya Parveen
RKRizwan Khan
Rizwan Khan

1 March 2012 in Journal of Biological Chemistry
Verified
Journal Article
Open access
BABasir Ahmad
Basir Ahmad
LLLisa Lapidus
Lisa Lapidus
α-Synuclein is a protein that is intrinsically disordered in vitro and prone to aggregation, particularly at high temperatures. In this work, we examined the ability of curcumin, a compound found in turmeric, to prevent aggregation of the protein. We found strong binding of curcumin to α-synuclein in the hydrophobic non-amyloid-β component region and complete inhibition of oligomers or fibrils. We also found that the reconfiguration rate within the unfolded protein was significantly increased at high temperatures. We conclude that α-synuclein is prone to aggregation because its reconfiguration rate is slow enough to expose hydrophobic residues on the same time scale that bimolecular association occurs. Curcumin rescues the protein from aggregation by increasing the reconfiguration rate into a faster regime.

1 September 2009 in Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy
Verified
Journal Article
Closed access
PSPriyankar Sen
Priyankar Sen
SFSadaf Fatima
Sadaf Fatima
BABasir Ahmad
Basir Ahmad
RKRizwan Khan
Rizwan Khan

7 June 2012 in PLOS ONE
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Journal Article
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Ejaz AhmadEjaz Ahmad
Ejaz Ahmad
Gulam RabbaniGulam Rabbani
Gulam Rabbani
NZNida Zaidi
Nida Zaidi
BABasir Ahmad
Basir Ahmad
RKRizwan Khan
Rizwan Khan
Structural changes in human serum albumin (HSA) induced by the pollutants 1-naphthol, 2-naphthol and 8-quinolinol were analyzed by circular dichroism, fluorescence spectroscopy and dynamic light scattering. The alteration in protein conformational stability was determined by helical content induction (from 55 to 75%) upon protein-pollutant interactions. Domain plasticity is responsible for the temperature-mediated unfolding of HSA. These findings were compared to HSA-hydrolase activity. We found that though HSA is a monomeric protein, it shows heterotropic allostericity for β-lactamase activity in the presence of pollutants, which act as K- and V-type non-essential activators. Pollutants cause conformational changes and catalytic modifications of the protein (increase in β-lactamase activity from 100 to 200%). HSA-pollutant interactions mediate other protein-ligand interactions, such as HSA-nitrocefin. Therefore, this protein can exist in different conformations with different catalytic properties depending on activator binding. This is the first report to demonstrate the catalytic allostericity of HSA through a mechanistic approach. We also show a correlation with non-microbial drug resistance as HSA is capable of self-hydrolysis of β-lactam drugs, which is further potentiated by pollutants due to conformational changes in HSA.

27 January 2012 in Proceedings of the National Academy of Sciences
Verified
Journal Article
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BABasir Ahmad
Basir Ahmad
YCYujie Chen
Yujie Chen
LLLisa Lapidus
Lisa Lapidus
We hypothesize that the first step of aggregation of disordered proteins, such as α-synuclein, is controlled by the rate of backbone reconfiguration. When reconfiguration is fast, bimolecular association is not stable, but as reconfiguration slows, association is more stable and subsequent aggregation is faster. To investigate this hypothesis, we have measured the rate of intramolecular diffusion in α-synuclein, a protein involved in Parkinson’s disease, under solvent conditions that accelerate or decelerate aggregation. Using the method of tryptophan-cysteine (Trp-Cys) quenching, the rate of intramolecular contact is measured in four different loops along the chain length. This intrinsically disordered protein is highly diffusive at low temperature at neutral pH, when aggregation is slow, and compacts and diffuses more slowly at high temperature or low pH, when aggregation is rapid. Diffusion also slows with the disease mutation A30P. This work provides unique insights into the earliest steps of α-synuclein aggregation pathway and should provide the basis for the development of drugs that can prevent aggregation at the initial stage.

1 March 2014 in Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
Verified
Journal Article
Closed access
MBMohanish S. Borana
Mohanish S. Borana
PMPushpa Mishra
Pushpa Mishra
RPRaghuvir Pissurlenkar
Raghuvir Pissurlenkar
RHRamakrishna V. Hosur
Ramakrishna V. Hosur
BABasir Ahmad
Basir Ahmad