Thomas L. Beck

Thomas L. Beck

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Thomas L. Beck

Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA

Research Focus & Metrics

Academic Career Length

35Years (1992-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 November 2023
Verified
Conference Paper
Open access
SAScott Atchley
Scott Atchley
CZChristopher Zimmer
Christopher Zimmer
JLJohn Lange
John Lange
DBDavid Bernholdt
David Bernholdt
VVVeronica Melesse Vergara
Veronica Melesse Vergara
PYP.K Yeung
P.K Yeung
As the US Department of Energy (DOE) computing facilities began deploying petascale systems in 2008, DOE was already setting its sights on exascale. In that year, DARPA published a report on the feasibility of reaching exascale. The report authors identified several key challenges in the pursuit of exascale including power, memory, concurrency, and resiliency. That report informed the DOE's computing strategy for reaching exascale. With the deployment of Oak Ridge National Laboratory's Frontier supercomputer, we have officially entered the exascale era. In this paper, we discuss Frontier's architecture, how it addresses those challenges, and describe some early application results from Oak Ridge Leadership Computing Facility's Center of Excellence and the Exascale Computing Project.

4 January 2010 in The Journal of Chemical Physics
Verified
Journal Article
Closed access
PDF file
ZZZhen Zhao
Zhen Zhao
DRDavid Rogers
David Rogers
TBThomas L. Beck
Thomas L. Beck
A theoretical study of the structural and electronic properties of the chloride ion and water molecules in the first hydration shell is presented. The calculations are performed on an ensemble of configurations obtained from molecular dynamics simulations of a single chloride ion in bulk water. The simulations utilize the polarizable AMOEBA force field for trajectory generation and MP2-level calculations are performed to examine the electronic structure properties of the ions and surrounding waters in the external field of more distant waters. The ChelpG method is employed to explore the effective charges and dipoles on the chloride ions and first-shell waters. The quantum theory of atoms in molecules (QTAIM) is further utilized to examine charge transfer from the anion to surrounding water molecules. The clusters extracted from the AMOEBA simulations exhibit high probabilities of anisotropic solvation for chloride ions in bulk water. From the QTAIM analysis, 0.2 elementary charges are transferred from the ion to the first-shell water molecules. The default AMOEBA model overestimates the average dipole moment magnitude of the ion compared to the quantum mechanical value. The average magnitude of the dipole moment of the water molecules in the first shell treated at the MP2-level, with the more distant waters handled with an AMOEBA effective charge model, is 2.67 D. This value is close to the AMOEBA result for first-shell waters (2.72 D) and is slightly reduced from the bulk AMOEBA value (2.78 D). The magnitude of the dipole moment of the water molecules in the first solvation shell is most strongly affected by the local water-water interactions and hydrogen bonds with the second solvation shell, rather than by interactions with the ion.

22 June 2004 in Proteins: Structure, Function, and Bioinformatics
Verified
Journal Article
Closed access
PDF file
JYJian Yin
Jian Yin
ZKZhifeng Kuang
Zhifeng Kuang
UMUma Mahankali
Uma Mahankali
TBThomas L. Beck
Thomas L. Beck

5 July 2011 in The Journal of Physical Chemistry B
Verified
Journal Article
Closed access
TBThomas L. Beck
Thomas L. Beck

4 April 2007 in Proteins: Structure, Function, and Bioinformatics
Verified
Journal Article
Closed access
PDF file
ZKZhifeng Kuang
Zhifeng Kuang
UMUma Mahankali
Uma Mahankali
TBThomas L. Beck
Thomas L. Beck

29 December 2023 in Journal of Chemical Theory and Computation
Verified
Journal Article
Closed access
DADilipkumar N. Asthagiri
Dilipkumar N. Asthagiri
TBThomas L. Beck
Thomas L. Beck