Lauren M. Miller

Lauren M. Miller

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Lauren M. Miller

Department of Biochemistry, University of Washington, Seattle, WA 98195, USA

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 October 2020 in Science
Verified
Journal Article
Open access
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LCLongxing Cao
Longxing Cao
IGInna Goreshnik
Inna Goreshnik
BCBrian Coventry
Brian Coventry
JCJames Brett Case
James Brett Case
LMLauren Miller
Lauren Miller
DBDavid Baker
David Baker
Miniproteins against SARS-CoV-2: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is decorated with spikes, and viral entry into cells is initiated when these spikes bind to the host angiotensin-converting enzyme 2 (ACE2) receptor. Many monoclonal antibody therapies in development target the spike proteins. Cao et al. designed small, stable proteins that bind tightly to the spike and block it from binding to ACE2. The best designs bind with very high affinity and prevent SARS-CoV-2 infection of mammalian Vero E6 cells. Cryo–electron microscopy shows that the structures of the two most potent inhibitors are nearly identical to the computational models. Unlike antibodies, the miniproteins do not require expression in mammalian cells, and their small size and high stability may allow formulation for direct delivery to the nasal or respiratory system. Science , this issue p. 426

21 January 2022 in Science
Verified
Journal Article
Open access
DSDanny D. Sahtoe
Danny D. Sahtoe
FPFlorian Praetorius
Florian Praetorius
ACAlexis Courbet
Alexis Courbet
YHYang Hsia
Yang Hsia
BWBasile I. M. Wicky
Basile I. M. Wicky
DBDavid Baker
David Baker
Asymmetric multiprotein complexes that undergo subunit exchange play central roles in biology but present a challenge for design because the components must not only contain interfaces that enable reversible association but also be stable and well behaved in isolation. We use implicit negative design to generate β sheet–mediated heterodimers that can be assembled into a wide variety of complexes. The designs are stable, folded, and soluble in isolation and rapidly assemble upon mixing, and crystal structures are close to the computational models. We construct linearly arranged hetero-oligomers with up to six different components, branched hetero-oligomers, closed C4-symmetric two-component rings, and hetero-oligomers assembled on a cyclic homo-oligomeric central hub and demonstrate that such complexes can readily reconfigure through subunit exchange. Our approach provides a general route to designing asymmetric reconfigurable protein systems.

20 April 2021 in Proceedings of the National Academy of Sciences
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Journal Article
Open access
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DSDanny D. Sahtoe
Danny D. Sahtoe
ACAdrian Coscia
Adrian Coscia
Nur MustafaogluNur Mustafaoglu
Nur Mustafaoglu
LMLauren M. Miller
Lauren M. Miller
DODaniel Olal
Daniel Olal
DBDavid Baker
David Baker
The de novo design of polar protein–protein interactions is challenging because of the thermodynamic cost of stripping water away from the polar groups. Here, we describe a general approach for designing proteins which complement exposed polar backbone groups at the edge of beta sheets with geometrically matched beta strands. We used this approach to computationally design small proteins that bind to an exposed beta sheet on the human transferrin receptor (hTfR), which shuttles interacting proteins across the blood–brain barrier (BBB), opening up avenues for drug delivery into the brain. We describe a design which binds hTfR with a 20 nM Kd, is hyperstable, and crosses an in vitro microfluidic organ-on-a-chip model of the human BBB. Our design approach provides a general strategy for creating binders to protein targets with exposed surface beta edge strands. Significance The de novo design of proteins that bind natural target proteins is useful for a variety of biomedical and biotechnological applications. We describe a design strategy to target proteins containing an exposed beta edge strand. We use the approach to design binders to the human transferrin receptor which shuttles back and forth across the blood–brain barrier. Such binders could be useful for the delivery of therapeutics into the brain.

25 December 2024 in American Journal of Ophthalmology Case Reports
Verified
Journal Article
Open access
LALauren M. Arguinchona
Lauren M. Arguinchona
MTMatthew R. Tukel
Matthew R. Tukel
LSLeonard K. Seibold
Leonard K. Seibold
To report a case of increased intraocular pressure following sauna use in a patient with severe-stage primary open-angle glaucoma. A 64-year-old Hispanic male with severe-stage primary open-angle glaucoma experienced intraocular pressure spikes following sauna sessions, as detected in clinic and confirmed by a home tonometry device. The intraocular pressure spikes resolved after combined goniotomy and glaucoma drainage device implantation. This case highlights the importance of a comprehensive and holistic assessment, including the consideration of exogenous lifestyle influences, to optimize glaucoma care and avoid or minimize daily activities that are potentially detrimental to disease.