Bence Daniel

Bence Daniel

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Bence Daniel

Department of Proteomic and Genomic Technologies, Genentech, South San Francisco, USA

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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2 April 2021 in Science
Verified
Journal Article
Open access
EWEvan W. Weber
Evan W. Weber
KPKevin R. Parker
Kevin R. Parker
ESElena Sotillo
Elena Sotillo
RLRachel C. Lynn
Rachel C. Lynn
HAHima Anbunathan
Hima Anbunathan
CMCrystal L. Mackall
Crystal L. Mackall
CAR-T cells rest to get back in the race: Chimeric antigen receptor (CAR)–T cells, which are engineered to target specific tumor antigens, are increasingly used as an immunotherapy. CAR-T cells have shown promising results in patients, particularly in hematologic cancers, but their anticancer activity can be limited by the onset of exhaustion and the loss of effectiveness. Weber et al. characterized the phenotypic and epigenomic changes associated with CAR-T cell exhaustion caused by continuous activity and the beneficial effects of transient rest periods (see the Perspective by Mamonkin and Brenner). The authors tested different approaches for providing these rest periods, such as using the drug dasatinib to temporarily suppress T cell activity, which helped to prevent exhaustion and improved antitumor activity in mouse models. Science , this issue p. eaba1786 ; see also p. 34

27 May 2022 in Nature Immunology
Verified
Journal Article
Closed access
PDF file
JBJulia A. Belk
Julia A. Belk
BDBence Daniel
Bence Daniel
ASAnsuman T. Satpathy
Ansuman T. Satpathy

24 August 2022 in Nature
Verified
Journal Article
Open access
PDF file
JCJulia Carnevale
Julia Carnevale
ESEric Shifrut
Eric Shifrut
NKNupura Kale
Nupura Kale
WNWilliam A. Nyberg
William A. Nyberg
FBFranziska Blaeschke
Franziska Blaeschke
AMAlex Marson
Alex Marson
The efficacy of adoptive T cell therapies for cancer treatment can be limited by suppressive signals from both extrinsic factors and intrinsic inhibitory checkpoints1,2. Targeted gene editing has the potential to overcome these limitations and enhance T cell therapeutic function3–10. Here we performed multiple genome-wide CRISPR knock-out screens under different immunosuppressive conditions to identify genes that can be targeted to prevent T cell dysfunction. These screens converged on RASA2, a RAS GTPase-activating protein (RasGAP) that we identify as a signalling checkpoint in human T cells, which is downregulated upon acute T cell receptor stimulation and can increase gradually with chronic antigen exposure. RASA2 ablation enhanced MAPK signalling and chimeric antigen receptor (CAR) T cell cytolytic activity in response to target antigen. Repeated tumour antigen stimulations in vitro revealed that RASA2-deficient T cells show increased activation, cytokine production and metabolic activity compared with control cells, and show a marked advantage in persistent cancer cell killing. RASA2-knockout CAR T cells had a competitive fitness advantage over control cells in the bone marrow in a mouse model of leukaemia. Ablation of RASA2 in multiple preclinical models of T cell receptor and CAR T cell therapies prolonged survival in mice xenografted with either liquid or solid tumours. Together, our findings highlight RASA2 as a promising target to enhance both persistence and effector function in T cell therapies for cancer treatment.

10 April 2024 in Nature
Verified
Journal Article
Open access
PDF file
ADAlexander E. Doan
Alexander E. Doan
KMKatherine P. Mueller
Katherine P. Mueller
ACAndy Y. Chen
Andy Y. Chen
GRGeoffrey T. Rouin
Geoffrey T. Rouin
YCYingshi Chen
Yingshi Chen
EWEvan W. Weber
Evan W. Weber
A major limitation of chimeric antigen receptor (CAR) T cell therapies is the poor persistence of these cells in vivo1. The expression of memory-associated genes in CAR T cells is linked to their long-term persistence in patients and clinical efficacy2–6, suggesting that memory programs may underpin durable CAR T cell function. Here we show that the transcription factor FOXO1 is responsible for promoting memory and restraining exhaustion in human CAR T cells. Pharmacological inhibition or gene editing of endogenous FOXO1 diminished the expression of memory-associated genes, promoted an exhaustion-like phenotype and impaired the antitumour activity of CAR T cells. Overexpression of FOXO1 induced a gene-expression program consistent with T cell memory and increased chromatin accessibility at FOXO1-binding motifs. CAR T cells that overexpressed FOXO1 retained their function, memory potential and metabolic fitness in settings of chronic stimulation, and exhibited enhanced persistence and tumour control in vivo. By contrast, overexpression of TCF1 (encoded by TCF7) did not enforce canonical memory programs or enhance the potency of CAR T cells. Notably, FOXO1 activity correlated with positive clinical outcomes of patients treated with CAR T cells or tumour-infiltrating lymphocytes, underscoring the clinical relevance of FOXO1 in cancer immunotherapy. Our results show that overexpressing FOXO1 can increase the antitumour activity of human CAR T cells, and highlight memory reprogramming as a broadly applicable approach for optimizing therapeutic T cell states.

26 October 2022 in Nature Immunology
Verified
Journal Article
Closed access
PDF file
BDBence Daniel
Bence Daniel
KYKathryn E. Yost
Kathryn E. Yost
SHSunnie Hsiung
Sunnie Hsiung
KSKatalin Sandor
Katalin Sandor
YXYu Xia
Yu Xia
ASAnsuman T. Satpathy
Ansuman T. Satpathy

11 November 2022 in Science
Verified
Journal Article
Closed access
KFKatherine A. Freitas
Katherine A. Freitas
JBJulia A. Belk
Julia A. Belk
ESElena Sotillo
Elena Sotillo
PQPatrick J. Quinn
Patrick J. Quinn
MRMaria C. Ramello
Maria C. Ramello
CMCrystal L. Mackall
Crystal L. Mackall
T cells are the major arm of the immune system responsible for controlling and regressing cancers. To identify genes limiting T cell function, we conducted genome-wide CRISPR knockout screens in human chimeric antigen receptor (CAR) T cells. Top hits were MED12 and CCNC , components of the Mediator kinase module. Targeted MED12 deletion enhanced antitumor activity and sustained the effector phenotype in CAR- and T cell receptor–engineered T cells, and inhibition of CDK8/19 kinase activity increased expansion of nonengineered T cells. MED12 -deficient T cells manifested increased core Meditator chromatin occupancy at transcriptionally active enhancers—most notably for STAT and AP-1 transcription factors—and increased IL2RA expression and interleukin-2 sensitivity. These results implicate Mediator in T cell effector programming and identify the kinase module as a target for enhancing potency of antitumor T cell responses.