Asem Alenaizan

Asem Alenaizan

Auto-generated profile, based on publicly available information

Asem Alenaizan

King Fahd University of Petroleum and Minerals

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 May 2020 in The Journal of Chemical Physics
Verified
Journal Article
Closed access
PDF file
DSDaniel G. A. Smith
Daniel G. A. Smith
LBLori A. Burns
Lori A. Burns
ASAndrew C. Simmonett
Andrew C. Simmonett
RPRobert M. Parrish
Robert M. Parrish
MSMatthew C. Schieber
Matthew C. Schieber
CSC. David Sherrill
C. David Sherrill
PSI4 is a free and open-source ab initio electronic structure program providing implementations of Hartree–Fock, density functional theory, many-body perturbation theory, configuration interaction, density cumulant theory, symmetry-adapted perturbation theory, and coupled-cluster theory. Most of the methods are quite efficient, thanks to density fitting and multi-core parallelism. The program is a hybrid of C++ and Python, and calculations may be run with very simple text files or using the Python API, facilitating post-processing and complex workflows; method developers also have access to most of PSI4’s core functionalities via Python. Job specification may be passed using The Molecular Sciences Software Institute (MolSSI) QCSCHEMA data format, facilitating interoperability. A rewrite of our top-level computation driver, and concomitant adoption of the MolSSI QCARCHIVE INFRASTRUCTURE project, makes the latest version of PSI4 well suited to distributed computation of large numbers of independent tasks. The project has fostered the development of independent software components that may be reused in other quantum chemistry programs.

17 May 2018 in Journal of Chemical Theory and Computation
Verified
Journal Article
Open access
DSDaniel G. A. Smith
Daniel G. A. Smith
LBLori A. Burns
Lori A. Burns
DSDominic A. Sirianni
Dominic A. Sirianni
DNDaniel R. Nascimento
Daniel R. Nascimento
AKAshutosh Kumar
Ashutosh Kumar
CSC. David Sherrill
C. David Sherrill
Psi4NumPy demonstrates the use of efficient computational kernels from the open-source Psi4 program through the popular NumPy library for linear algebra in Python to facilitate the rapid development of clear, understandable Python computer code for new quantum chemical methods, while maintaining a relatively low execution time. Using these tools, reference implementations have been created for a number of methods, including self-consistent field (SCF), SCF response, many-body perturbation theory, coupled-cluster theory, configuration interaction, and symmetry-adapted perturbation theory. Furthermore, several reference codes have been integrated into Jupyter notebooks, allowing background, underlying theory, and formula information to be associated with the implementation. Psi4NumPy tools and associated reference implementations can lower the barrier for future development of quantum chemistry methods. These implementations also demonstrate the power of the hybrid C++/Python programming approach employed by the Psi4 program.

22 November 2021 in The Journal of Chemical Physics
Verified
Journal Article
Closed access
PDF file
DSDaniel G. A. Smith
Daniel G. A. Smith
ALAnnabelle T. Lolinco
Annabelle T. Lolinco
ZGZachary L. Glick
Zachary L. Glick
JLJiyoung Lee
Jiyoung Lee
AAAsem Alenaizan
Asem Alenaizan
LBLori A. Burns
Lori A. Burns
Community efforts in the computational molecular sciences (CMS) are evolving toward modular, open, and interoperable interfaces that work with existing community codes to provide more functionality and composability than could be achieved with a single program. The Quantum Chemistry Common Driver and Databases (QCDB) project provides such capability through an application programming interface (API) that facilitates interoperability across multiple quantum chemistry software packages. In tandem with the Molecular Sciences Software Institute and their Quantum Chemistry Archive ecosystem, the unique functionalities of several CMS programs are integrated, including CFOUR, GAMESS, NWChem, OpenMM, Psi4, Qcore, TeraChem, and Turbomole, to provide common computational functions, i.e., energy, gradient, and Hessian computations as well as molecular properties such as atomic charges and vibrational frequency analysis. Both standard users and power users benefit from adopting these APIs as they lower the language barrier of input styles and enable a standard layout of variables and data. These designs allow end-to-end interoperable programming of complex computations and provide best practices options by default.

22 August 2019 in International Journal of Quantum Chemistry
Verified
Journal Article
Closed access
PDF file
AAAsem Alenaizan
Asem Alenaizan
LBLori A. Burns
Lori A. Burns
CSC. David Sherrill
C. David Sherrill

15 May 2018 in Journal of Chemical Theory and Computation
Verified
Journal Article
Closed access
DSDominic A. Sirianni
Dominic A. Sirianni
AAAsem Alenaizan
Asem Alenaizan
DCDaniel L. Cheney
Daniel L. Cheney
CSC. David Sherrill
C. David Sherrill

10 November 2020 in Chemistry – A European Journal
Verified
Journal Article
Closed access
PDF file
AAAsem Alenaizan
Asem Alenaizan
KFKévin Fauché
Kévin Fauché
RKRamanarayanan Krishnamurthy
Ramanarayanan Krishnamurthy
CSC. David Sherrill
C. David Sherrill