David F. Choy

David F. Choy

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David F. Choy

Genentech, Inc., South San Francisco, California; and

Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 September 2009 in American Journal of Respiratory and Critical Care Medicine
Verified
Journal Article
Closed access
PWPrescott G. Woodruff
Prescott G. Woodruff
BMBarmak Modrek
Barmak Modrek
DCDavid F. Choy
David F. Choy
GJGuiquan Jia
Guiquan Jia
AAAlexander R. Abbas
Alexander R. Abbas
JFJohn V. Fahy
John V. Fahy
Rationale: T-helper type 2 (Th2) inflammation, mediated by IL-4, IL-5, and IL-13, is considered the central molecular mechanism underlying asthma, and Th2 cytokines are emerging therapeutic targets. However, clinical studies increasingly suggest that asthma is heterogeneous. Objectives: To determine whether this clinical heterogeneity reflects heterogeneity in underlying molecular mechanisms related to Th2 inflammation. Methods: Using microarray and polymerase chain reaction analyses of airway epithelial brushings from 42 patients with mild-to-moderate asthma and 28 healthy control subjects, we classified subjects with asthma based on high or low expression of IL-13–inducible genes. We then validated this classification and investigated its clinical implications through analyses of cytokine expression in bronchial biopsies, markers of inflammation and remodeling, responsiveness to inhaled corticosteroids, and reproducibility on repeat examination. Measurements and Main Results: Gene expression analyses identified two evenly sized and distinct subgroups, “Th2-high” and “Th2-low” asthma (the latter indistinguishable from control subjects). These subgroups differed significantly in expression of IL-5 and IL-13 in bronchial biopsies and in airway hyperresponsiveness, serum IgE, blood and airway eosinophilia, subepithelial fibrosis, and airway mucin gene expression (all P < 0.03). The lung function improvements expected with inhaled corticosteroids were restricted to Th2-high asthma, and Th2 markers were reproducible on repeat evaluation. Conclusions: Asthma can be divided into at least two distinct molecular phenotypes defined by degree of Th2 inflammation. Th2 cytokines are likely to be a relevant therapeutic target in only a subset of patients with asthma. Furthermore, current models do not adequately explain non–Th2-driven asthma, which represents a significant proportion of patients and responds poorly to current therapies.

15 April 2013 in American Journal of Respiratory and Critical Care Medicine
Verified
Journal Article
Closed access
NHNicola A. Hanania
Nicola A. Hanania
SWSally Wenzel
Sally Wenzel
KRKarin Rosén
Karin Rosén
HHHsin-Ju Hsieh
Hsin-Ju Hsieh
SMSofia Mosesova
Sofia Mosesova
WBWilliam Busse
William Busse
Rationale: For many patients with asthma, allergic airway inflammation is primarily a Th2-weighted process; however, heterogeneity in patterns of inflammation suggests phenotypic distinctions exist that influence disease presentation and treatment effects. Objectives: To assess the potential of fractional exhaled nitric oxide (FeNO), peripheral blood eosinophil count, and serum periostin as biomarkers of Th2 inflammation and predictors of treatment effects of omalizumab. Methods: The EXTRA omalizumab study enrolled patients (aged 12–75 yr) with uncontrolled severe persistent allergic asthma. Analyses were performed evaluating treatment effects in relation to FeNO, blood eosinophils, and serum periostin at baseline. Patients were divided into low- and high-biomarker subgroups. Treatment effects were evaluated as number of protocol-defined asthma exacerbations during the 48-week treatment period (primary endpoint). Measurements and Main Results: A total of 850 patients were enrolled. Data were available from 394 (46.4%), 797 (93.8%), and 534 (62.8%) patients for FeNO, blood eosinophils, and serum periostin, respectively. After 48 weeks of omalizumab, reductions in protocol-defined exacerbations were greater in high versus low subgroups for all three biomarkers: FeNO, 53% (95% confidence interval [CI], 37–70; P = 0.001) versus 16% (95% CI, −32 to 46; P = 0.45); eosinophils, 32% (95% CI, 11–48; P = 0.005) versus 9% (95% CI, −24 to 34; P = 0.54); and periostin, 30% (95% CI, −2 to 51; P = 0.07) versus 3% (95% CI, −43 to 32; P = 0.94). Conclusions: The difference in exacerbation frequency between omalizumab and placebo was greatest in the three high-biomarker subgroups, probably associated with the greater risk for exacerbations in high subgroups. Additional studies are required to explore the value of these biomarkers in clinical practice. Clinical trial registered with www.clinicaltrials.gov (NCT00314574).

1 September 2012 in Journal of Allergy and Clinical Immunology
Verified
Journal Article
Closed access
GJGuiquan Jia
Guiquan Jia
RERichard W. Erickson
Richard W. Erickson
DCDavid F. Choy
David F. Choy
SMSofia Mosesova
Sofia Mosesova
LWLawren C. Wu
Lawren C. Wu
JAJoseph R. Arron
Joseph R. Arron

30 April 2014 in Arthritis Research & Therapy
Verified
Journal Article
Open access
PDF file
GDGlynn Dennis
Glynn Dennis
CHCécile Tj Holweg
Cécile Tj Holweg
SKSarah K Kummerfeld
Sarah K Kummerfeld
DCDavid F Choy
David F Choy
ASA Francesca Setiadi
A Francesca Setiadi
MTMichael J Townsend
Michael J Townsend
Introduction: Rheumatoid arthritis (RA) is a complex and clinically heterogeneous autoimmune disease. Currently, the relationship between pathogenic molecular drivers of disease in RA and therapeutic response is poorly understood. Methods: We analyzed synovial tissue samples from two RA cohorts of 49 and 20 patients using a combination of global gene expression, histologic and cellular analyses, and analysis of gene expression data from two further publicly available RA cohorts. To identify candidate serum biomarkers that correspond to differential synovial biology and clinical response to targeted therapies, we performed pre-treatment biomarker analysis compared with therapeutic outcome at week 24 in serum samples from 198 patients from the ADACTA (ADalimumab ACTemrA) phase 4 trial of tocilizumab (anti-IL-6R) monotherapy versus adalimumab (anti-TNFα) monotherapy. Results: We documented evidence for four major phenotypes of RA synovium – lymphoid, myeloid, low inflammatory, and fibroid - each with distinct underlying gene expression signatures. We observed that baseline synovial myeloid, but not lymphoid, gene signature expression was higher in patients with good compared with poor European league against rheumatism (EULAR) clinical response to anti-TNFα therapy at week 16 (P =0.011). We observed that high baseline serum soluble intercellular adhesion molecule 1 (sICAM1), associated with the myeloid phenotype, and high serum C-X-C motif chemokine 13 (CXCL13), associated with the lymphoid phenotype, had differential relationships with clinical response to anti-TNFα compared with anti-IL6R treatment. sICAM1-high/CXCL13-low patients showed the highest week 24 American College of Rheumatology (ACR) 50 response rate to anti-TNFα treatment as compared with sICAM1-low/CXCL13-high patients (42% versus 13%, respectively, P =0.05) while anti-IL-6R patients showed the opposite relationship with these biomarker subgroups (ACR50 20% versus 69%, P =0.004). Conclusions: These data demonstrate that underlying molecular and cellular heterogeneity in RA impacts clinical outcome to therapies targeting different biological pathways, with patients with the myeloid phenotype exhibiting the most robust response to anti-TNFα. These data suggest a path to identify and validate serum biomarkers that predict response to targeted therapies in rheumatoid arthritis and possibly other autoimmune diseases. Trial registration: ClinicalTrials.gov NCT01119859

1 January 2012 in Journal of Allergy and Clinical Immunology
Verified
Journal Article
Closed access
ASAarti Shikotra
Aarti Shikotra
DCDavid F. Choy
David F. Choy
COChandra M. Ohri
Chandra M. Ohri
EDEmma Doran
Emma Doran
CBClaire Butler
Claire Butler
PBPeter Bradding
Peter Bradding

1 April 2008 in Molecular Therapy
Verified
Journal Article
Open access
PDF file
PCPeter A Campochiaro
Peter A Campochiaro
GHGulnar Hafiz
Gulnar Hafiz
SSSyed Mahmood Shah
Syed Mahmood Shah
QNQuan Dong Nguyen
Quan Dong Nguyen
HYHoward Ying
Howard Ying
JAJoseph R Arron
Joseph R Arron
Macular edema is a major cause of vision loss in patients with central retinal vein occlusion (CRVO) or branch retinal vein occlusion (BRVO). It is not clear how much of the edema is due to hydrodynamic changes from the obstruction and how much is due to chemical mediators. Patients with macular edema due to CRVO (n = 20) or BRVO (n = 20) were randomized to receive three monthly injections of 0.3 or 0.5 mg of ranibizumab. At the primary endpoint, month 3, the median improvement in letters read at 4 m was 17 in the 0.3-mg group and 14 in the 0.5-mg group for CRVO, and 10 and 18, respectively for the BRVO group. Optical coherence tomography (OCT) showed that compared to injections of 0.3 mg, injections of 0.5 mg of ranibizumab tended to cause more rapid reductions of central retinal thickening that lasted longer between injections, but in 3 months, excess central retinal thickening which is a quantitative assessment of the macular edema, was reduced by ∼90% in all four treatment groups. There was no correlation between the amount of improvement and duration of disease or patient age at baseline, but there was some correlation between the aqueous vascular endothelial growth factor (VEGF) level at baseline and amount of improvement. These data indicate that excess production of VEGF in the retinas of patients with CRVO or BRVO is a major contributor to macular edema and suggest that additional studies investigating the efficacy of intraocular injections of ranibizumab are needed.