Benjamin Bobay

Dr. Benjamin Bobay

Radiology, Duke University, Durham, California, USA
orcid

Research Focus & Metrics

Academic Career Length

26Years (2001-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 November 2023 in Science Advances
Verified
Journal Article
Open access
ZLZhiyong Liu
Zhiyong Liu
ASArpine Sokratian
Arpine Sokratian
ADAddison M. Duda
Addison M. Duda
EXEnquan Xu
Enquan Xu
CSChristina Stanhope
Christina Stanhope
AWAndrew B. West
Andrew B. West
Recent studies have identified increasing levels of nanoplastic pollution in the environment. Here, we find that anionic nanoplastic contaminants potently precipitate the formation and propagation of α-synuclein protein fibrils through a high-affinity interaction with the amphipathic and non-amyloid component (NAC) domains in α-synuclein. Nanoplastics can internalize in neurons through clathrin-dependent endocytosis, causing a mild lysosomal impairment that slows the degradation of aggregated α-synuclein. In mice, nanoplastics combine with α-synuclein fibrils to exacerbate the spread of α-synuclein pathology across interconnected vulnerable brain regions, including the strong induction of α-synuclein inclusions in dopaminergic neurons in the substantia nigra. These results highlight a potential link for further exploration between nanoplastic pollution and α-synuclein aggregation associated with Parkinson’s disease and related dementias.

19 September 2019 in Nature Communications
Verified
Journal Article
Open access
PDF file
Praveen JuvvadiPraveen Juvvadi
Praveen Juvvadi
DFDavid Fox
David Fox
BBBenjamin Bobay
Benjamin Bobay
MHMichael J. Hoy
Michael J. Hoy
SGSophie M. C. Gobeil
Sophie M. C. Gobeil
WSWilliam Steinbach
William Steinbach
Calcineurin is important for fungal virulence and a potential antifungal target, but compounds targeting calcineurin, such as FK506, are immunosuppressive. Here we report the crystal structures of calcineurin catalytic (CnA) and regulatory (CnB) subunits complexed with FK506 and the FK506-binding protein (FKBP12) from human fungal pathogens (Aspergillus fumigatus, Candida albicans, Cryptococcus neoformans and Coccidioides immitis). Fungal calcineurin complexes are similar to the mammalian complex, but comparison of fungal and human FKBP12 (hFKBP12) reveals conformational differences in the 40s and 80s loops. NMR analysis, molecular dynamic simulations, and mutations of the A. fumigatus CnA/CnB-FK506-FKBP12-complex identify a Phe88 residue, not conserved in hFKBP12, as critical for binding and inhibition of fungal calcineurin. These differences enable us to develop a less immunosuppressive FK506 analog, APX879, with an acetohydrazine substitution of the C22-carbonyl of FK506. APX879 exhibits reduced immunosuppressive activity and retains broad-spectrum antifungal activity and efficacy in a murine model of invasive fungal infection.

1 November 2007 in Journal of Bacteriology
Verified
Journal Article
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MSMark A. Strauch
Mark A. Strauch
BBBenjamin Bobay
Benjamin Bobay
JCJohn Cavanagh
John Cavanagh
FYFude Yao
Fude Yao
AWAngelo Wilson
Angelo Wilson
YBYoann Le Breton
Yoann Le Breton
The Bacillus subtilis abh gene encodes a protein whose N-terminal domain has 74% identity to the DNA-binding domain of the global regulatory protein AbrB. Strains with a mutation in abh showed alterations in the production of antimicrobial compounds directed against some other Bacillus species and gram-positive microbes. Relative to its wild-type parental strain, the abh mutant was found deficient, enhanced, or unaffected for the production of antimicrobial activity. Using lacZ fusions, we examined the effects of abh upon the expression of 10 promoters known to be regulated by AbrB, including five that transcribe well-characterized antimicrobial functions (SdpC, SkfA, TasA, sublancin, and subtilosin). For an otherwise wild-type background, the results show that Abh plays a negative regulatory role in the expression of four of the promoters, a positive role for the expression of three, and no apparent regulatory role in the expression of the other three promoters. Binding of AbrB and Abh to the promoter regions was examined using DNase I footprinting, and the results revealed significant differences. The transcription of abh is not autoregulated, but it is subject to a degree of AbrB-afforded negative regulation. The results indicate that Abh is part of the complex interconnected regulatory system that controls gene expression during the transition from active growth to stationary phase.

27 November 2012 in Biochemistry
Verified
Journal Article
Closed access
RTRichele J. Thompson
Richele J. Thompson
BBBenjamin Bobay
Benjamin Bobay
SSSean D. Stowe
Sean D. Stowe
AOAndrew L. Olson
Andrew L. Olson
LPLingling Peng
Lingling Peng
JCJohn Cavanagh
John Cavanagh

4 January 2010 in Journal of Molecular Recognition
Verified
Journal Article
Closed access
PDF file
HYHaiou Yang
Haiou Yang
PGPatrick V. Gurgel
Patrick V. Gurgel
DWD. Keith Williams
D. Keith Williams
BBBenjamin Bobay
Benjamin Bobay
JCJohn Cavanagh
John Cavanagh
Ruben CarbonellRuben Carbonell
Ruben Carbonell

30 October 2001 in Biochemistry
Verified
Journal Article
Closed access
CPCristina Pop
Cristina Pop
YCYun-Ru Chen
Yun-Ru Chen
BSBrandye Smith
Brandye Smith
KBKakoli Bose
Kakoli Bose
BBBenjamin Bobay
Benjamin Bobay
ACA. Clay Clark
A. Clay Clark