Soil health has been defined as the capacity of soil to function as a vital living system to sustain biological productivity, maintain environmental quality, and promote plant, animal, and human health. Building and maintaining soil health are essential to agricultural sustainability and ecosystem function. Management practices that promote soil health, including the use of crop rotations, cover crops and green manures, organic amendments, and conservation tillage, also have generally positive effects on the management of soilborne diseases through a number of potential mechanisms, including increasing soil microbial biomass, activity, and diversity, resulting in greater biological suppression of pathogens and diseases. However, there also may be particular disease issues associated with some soil health management practices. In this review, research and progress made over the past twenty years regarding soil health, sustainability, and soil health management practices, with an emphasis on their implications for and effects on plant disease and disease management strategies, are summarized.

Seven different 2-year rotations, consisting of barley/clover, canola, green bean, millet/rapeseed, soybean, sweet corn, and potato, all followed by potato, were assessed over 10 years (1997–2006) in a long-term cropping system trial for their effects on the development of soilborne potato diseases, tuber yield, and soil microbial communities. These same rotations were also assessed with and without the addition of a fall cover crop of no-tilled winter rye (except for barley/clover, for which underseeded ryegrass was substituted for clover) over a 4-year period. Canola and rapeseed rotations consistently reduced the severity of Rhizoctonia canker, black scurf, and common scab (18 to 38% reduction), and canola rotations resulted in higher tuber yields than continuous potato or barley/clover (6.8 to 8.2% higher). Addition of the winter rye cover crop further reduced black scurf and common scab (average 12.5 and 7.2% reduction, respectively) across all rotations. The combined effect of a canola or rapeseed rotation and winter rye cover crop reduced disease severity by 35 to 41% for black scurf and 20 to 33% for common scab relative to continuous potato with no cover crop. Verticillium wilt became a prominent disease problem only after four full rotation cycles, with high disease levels in all plots; however, incidence was lowest in barley rotations. Barley/clover and rapeseed rotations resulted in the highest soil bacterial populations and microbial activity, and all rotations had distinct effects on soil microbial community characteristics. Addition of a cover crop also resulted in increases in bacterial populations and microbial activity and had significant effects on soil microbial characteristics, in addition to slightly improving tuber yield (4% increase). Thus, in addition to positive effects in reducing erosion and improving soil quality, effective crop rotations in conjunction with planting cover crops can provide improved control of soilborne diseases. However, this study also demonstrated limitations with 2-year rotations in general, because all rotations resulted in increasing levels of common scab and Verticillium wilt over time.

Four different potato cropping systems, designed to address specific management goals of soil conservation, soil improvement, disease suppression, and a status quo standard rotation control, were evaluated for their effects on soilborne diseases of potato and soil microbial community characteristics. The status quo system (SQ) consisted of barley underseeded with red clover followed by potato (2-year). The soil-conserving system (SC) featured an additional year of forage grass and reduced tillage (3-year, barley/timothy–timothy–potato). The soil-improving system (SI) added yearly compost amendments to the SC rotation, and the disease-suppressive system (DS) featured diverse crops with known disease-suppressive capability (3-year, mustard/rapeseed–sudangrass/rye–potato). Each system was also compared with a continuous potato control (PP) and evaluated under both irrigated and nonirrigated conditions. Data collected over three potato seasons following full rotation cycles demonstrated that all rotations reduced stem canker (10 to 50%) relative to PP. The SQ, SC, and DS systems reduced black scurf (18 to 58%) relative to PP; SI reduced scurf under nonirrigated but not irrigated conditions; and scurf was lower in DS than all other systems. The SQ, SC, and DS systems also reduced common scab (15 to 45%), and scab was lower in DS than all other systems. Irrigation increased black scurf and common scab but also resulted in higher yields for most rotations. SI produced the highest yields under nonirrigated conditions, and DS produced high yields and low disease under both irrigation regimes. Each cropping system resulted in distinctive changes in soil microbial community characteristics as represented by microbial populations, substrate utilization, and fatty acid methyl-ester (FAME) profiles. SI tended to increase soil moisture, microbial populations, and activity, as well result in higher proportions of monounsaturated FAMEs and the FAME biomarker for mycorrhizae (16:1 ω6c) relative to most other rotations. DS resulted in moderate microbial populations and activity but higher substrate richness and diversity in substrate utilization profiles. DS also resulted in relatively higher proportions of FAME biomarkers for fungi (18:2 ω6c), actinomycetes, and gram-positive bacteria than most other systems, whereas PP resulted in the lowest microbial populations and activity; substrate richness and diversity; proportions of monounsaturated and polyunsaturated FAME classes; and fungal, mycorrhizae, and actinomycete FAME biomarkers of all cropping systems. Overall, soil water, soil quality, and soilborne diseases were all important factors affecting productivity, and cropping systems addressing these constraints improved production. Cropping system approaches will need to balance these factors to achieve sustainable production and disease management.

Cropping systems and management practices that improve soil health may greatly enhance crop productivity. Four different potato cropping systems designed to address specific management goals of soil conservation (SC), soil improvement (SI), disease suppression (DS), and a status quo (SQ) standard rotation, along with a non-rotation (PP) control, were evaluated for their effects on potato crop growth, nutrient, and yield characteristics under both irrigated and non-irrigated (rainfed) conditions in field trials in Maine, USA, from 2004 to 2010. Both cropping system and irrigation significantly (p < 0.05) affected most potato crop parameters associated with growth and yield. All rotations increased tuber yield relative to the non-rotation PP control, and the SI system, which included yearly compost amendments, resulted in overall higher yields and a higher percentage of large-size tubers than all other systems with no irrigation (increases of 14 to 90%). DS, which contained disease-suppressive green manures and cover crops, produced the highest yields overall under irrigation (increases of 11 to 35%). Irrigation increased tuber yields in all cropping systems except SI (average increase of 27–37%). SI also resulted in significant increases in leaf area duration and chlorophyll content (as indicators of photosynthetic potential) and root and shoot biomass relative to other cropping systems, particularly under non-irrigated conditions. SI also resulted in higher shoot and tuber tissue concentrations of N, P, and K, but not most micronutrients. Overall, cropping systems that incorporate management practices such as increased rotation length and the use of cover crops, green manures, reduced tillage, and particularly, organic amendments, can substantially improve potato crop growth and yield. Irrigation also substantially increased growth and yield under normal field conditions in Maine, but SI, with its large organic amendments, was essentially a substitute for irrigation, producing comparable results without irrigation.