The Atlantic Forest is one of the most disturbed Brazilian biomes, with 183 out of 298 species of mammals occurring in the state of Rio de Janeiro. In this study, we aimed to characterize the diversity, community structure, and habitat use of small mammals in the FIOCRUZ Atlantic Forest Campus (CFMA), including areas of Pedra Branca State Park (PBSP, subunit Pau da Fome), state of Rio de Janeiro. We also compared species diversity and composition between two moments 15 years apart (2001 and 2012–2015) and analyzed the population dynamics of the marsupialDidelphisaurita(Wied-Neuwied, 1826). Small mammal captures were made in different habitats: sylvatic-urban interface areas near human dwellings, disturbed forest, and preserved forest areas. Five marsupial species and four rodent species were captured in both periods. There was a reduction in species richness and β diversity between the two periods, indicating that disturbances in the environment over the years may have affected the small mammal community structure. The most altered environment showed the greatest species richness and abundance, while the forest areas showed the smallest values, which may be explained by the loss of mammal species, mainly specialist species in forested areas. We identified three groups of species according to habitat preferences: one related to environments with a higher density of vegetation in upper strata –Marmosaparaguayana(Tate, 1931) andMonodelphisamericana(Müller, 1776), another related to a higher density in lower forest strata –Akodoncursor(Winge, 1887), and another with no association with the investigated habitat variables –D.auritaandOligoryzomysnigripes(Olfers, 1818). The small mammal community structure showed a low level of nestedness in both sampling periods. This study is the first report to evaluate the community structure of small mammals in the sylvatic-urban interface area of Pedra Branca State Park, the largest forest reserve within an urban area in Brazil. The surveys indicate that the small mammal diversity was low in both sampling periods and in both areas, and a species loss in the Pau da Fome locality was observed, despite it is a conservation unit. The greater species abundance and richness in the most disturbed areas suggest an increase of factors favoring the occurrence of synanthropic and opportunistic species.

Understanding the role of species traits in mediating ecological interactions and shaping community structure is a key question in ecology. In this sense, parasite population parameters allow us to estimate the functional importance of traits in shaping the strength of interactions among hosts and parasites in a network. The aim of this study was to survey and analyse the small mammal-helminth network in a forest reserve of the Brazilian Atlantic Forest in order to understand (i) how functional traits (type of parasite life cycle, site of infection in their host, host and parasite body length, host diet, host locomotor habit and host activity period) and abundance influence host–parasite interactions, (ii) whether these traits explain species roles, and (iii) if this relationship is consistent across different parasite population parameters (presence and absence, mean abundance and prevalence). Networks were modular and their structural patterns did not vary among the population parameters. Functional traits and abundance shaped the interactions observed between parasites and hosts. Host species abundance, host diet and locomotor habit affected their centrality and/or vulnerability to parasites. For helminths, infection niche was the main trait determining their central roles in the networks.

The role of environmental factors and landscape heterogeneity on species distribution on different spatial scales is one of the most important questions in community ecology. Variations in the environmental gradient characteristics, host attributes and spatial scales may influence the parasites distribution. The helminth metacommunity of 12 small mammal species was investigated in an Atlantic Forest reserve located in the State of Rio de Janeiro, southeast Brazil. We evaluated the influence of environmental variables, host attributes and spatial factors on the helminth metacommunity of small mammals, considering infracommunity and component community levels. Twenty-nine helminth morphospecies were recovered. The host attributes and spatial variables influenced the abundance of helminth species in the metacommunities for rodents and marsupials together, and for rodents alone at the infracommunity level. Host body mass, host diet and spatial variables at broad spatial scale (among localities) were the most important variables to explain the variation in helminth abundance. Parasite species richness influenced this variation only for the marsupial helminth metacommunity at the infracommunity level. The metacommunity showed larger turnover (parasite replacement) than nestedness (parasite loss) for their helminth species at both infracommunity and component community levels, which is associated with a high host specificity, and low helminth sharing among hosts for most species, resulting in a structured metacommunity.

Didelphis albiventrisis the opossum with the largest geographic distribution in Brazil and has a wide spectrum of helminth parasites. This study aimed to describe the species composition and analyse the structure of helminth communities ofD.albiventrisin two extremes of the Atlantic Forest in Brazil. The influence of host sex, body mass, age, helminth species richness and locality on the abundance and prevalence of the most prevalent helminth species was investigated. Ninety-five per cent of the animals were infected with at least one species. Nine helminth species were found: the nematodesAspidodera raillieti,Cruzia tentaculata,Trichuris didelphisandTrichuris minutain the large intestine;Turgida turgidain the stomach;Travassostrongylus orloffiandViannaia hamata; and the trematodesBrachylaima advenaandRhopalias coronatusin the small intestine. Three helminth morphospecies were also recovered: the nematodesHoineffiasp. andViannaiasp. and a cestode in the small intestine.Cruzia tentaculataandV.hamatawere the species with the highest mean abundances and intensities, while the most prevalent species wereA.raillieti,C.tentaculata,T.turgidaandV.hamata, forming the central nucleus of the helminth component community. The analysis of the helminth metacommunity structure indicated a Gleasonian pattern for the total set of infracommunities, corroborating the beta diversity indices, which indicated more species replacement than loss between localities and infracommunities, although at a low level. The results indicated a stronger influence of host attributes than geographical distance on the community structure.

Background: The population genetics of parasites may be influenced by host specificity, life cycle, host geographical range, evolutionary history, and host population structure. The nematodeAspidodera raillietiinfects different marsupial and rodent hosts in the Nearctic and Neotropical regions, implying a gene flow among populations. However, niche diversification of the main hosts ofA. raillietiin superimposed areas may provide conditions for population genetic structuring within this parasite species. We examined the genetic structuring ofA. raillietiinfecting three marsupial species co-occurring along the South and Southeast Brazilian Atlantic Forest, a hotspot of biodiversity.Methods: We employed morphometric analyses and partial mitochondrial cytochrome c oxidase I gene sequences (MT-CO1) to characterize populations via phylogenetic and phylogeographic analyses.Results: Among 175A. raillietispecimens recovered from the marsupial hostsDidelphis aurita,D. albiventris, andPhilander quica, we identified 99 MT-CO1 haplotypes forming four haplogroups and four clades in networks and phylogenetic trees, respectively. Clades I and II encompassed parasites ofD. albiventrisfrom the South region, clade III comprised parasites ofD. auritafrom the South and Southeast regions, and clade IV encompassed parasites ofD. auritaandD. albiventrisfrom the South and Southeast regions and parasites ofP. quicafrom the South region. High genetic differentiation between clades, with a high fixation index and greater genetic variation in the analysis of molecular variance (AMOVA), indicated low gene flow between clades. Haplotypes shared among host species revealed a lack of host specificity. A significant correlation in the Mantel test suggested parasite isolation by distance, while there was no evidence of geographical structure between populations. Negative neutrality test values for clades III and IV suggested recent population expansion. Morphometric differentiation betweenA. raillietispecimens recovered from different host species, as well as from different localities, was more evident in males.Conclusion: The genetic structure ofA. raillietipopulations in the South and Southeast Atlantic Forest resulted from historical events rather than from current geographical distribution or host specificity. We also demonstrate morphometric variation associated with host species and localities, suggesting phenotypic plasticity to host attributes and to spatial variables.Graphical

The predominant landscape of the Atlantic Forest of the Brazilian state of Rio de Janeiro is made up of forest fragments surrounded by a matrix of modified habitat, which may influence the occurrence and distribution of host species and their parasites in comparison with the original continuous forest. The present study describes the structure, composition, and diversity of the helminth community found in rodents in two areas of an open matrix of different status of conservation. The abundance, intensity, and prevalence were calculated for each helminth species in rodent species. The influence of biotic and abiotic factors on the abundance and prevalence of the helminth species was also investigated. Community structure was analyzed based on the beta diversity and a bipartite network. Nine helminth species were recovered from Akodon cursor, Necromys lasiurus and Mus musculus, with the greatest helminth species richness being recorded in A. cursor (S = 8), followed by N. lasiurus (S = 6), and M. musculus (S = 3). Only three of the helminths recorded in A. cursor had been recorded previously in this rodent in the Atlantic Forest, where 12 different helminths have been recorded, so that the other five are new occurrences for this rodent. All the helminth species of N. lasiurus had been reported previously in this rodent in the Cerrado and Caatinga regions. Mus musculus was infected with the same helminths as the local fauna. Host species and locality were the most important factors influencing helminth abundance and prevalence. Beta-diversity was high for infracommunities indicating more substitutions of helminth species than losses among individuals. Three helminths species were shared by the three host species. The reduced beta-diversity observed in the component communities was consistent with the overlap observed in the helminth fauna of the host species.