Cihan Erkut

Dr. Cihan Erkut

German Cancer Research Center (DKFZ)
+1
orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
1 August 2011 in Current Biology
Verified
Journal Article
Closed access
Cihan ErkutCihan Erkut
Cihan Erkut
SPSider Penkov
Sider Penkov
HKHassan Khesbak
Hassan Khesbak
DVDaniela Vorkel
Daniela Vorkel
JVJean-Marc Verbavatz
Jean-Marc Verbavatz
TKTeymuras V. Kurzchalia
Teymuras V. Kurzchalia

4 December 2013 in PLOS ONE
Verified
Journal Article
Open access
PDF file
Cihan ErkutCihan Erkut
Cihan Erkut
AVAndrej Vasilj
Andrej Vasilj
SBSebastian Boland
Sebastian Boland
Bianca HabermannBianca Habermann
Bianca Habermann
ASAndrej Shevchenko
Andrej Shevchenko
TKTeymuras V. Kurzchalia
Teymuras V. Kurzchalia
Massive water loss is a serious challenge for terrestrial animals, which usually has fatal consequences. However, some organisms have developed means to survive this stress by entering an ametabolic state called anhydrobiosis. The molecular and cellular mechanisms underlying this phenomenon are poorly understood. We recently showed that Caenorhabditis elegans dauer larva, an arrested stage specialized for survival in adverse conditions, is resistant to severe desiccation. However, this requires a preconditioning step at a mild desiccative environment to prepare the organism for harsher desiccation conditions. A systems approach was used to identify factors that are activated during this preconditioning. Using microarray analysis, proteomics, and bioinformatics, genes, proteins, and biochemical pathways that are upregulated during this process were identified. These pathways were validated via reverse genetics by testing the desiccation tolerances of mutants. These data show that the desiccation response is activated by hygrosensation (sensing the desiccative environment) via head neurons. This leads to elimination of reactive oxygen species and xenobiotics, expression of heat shock and intrinsically disordered proteins, polyamine utilization, and induction of fatty acid desaturation pathway. Remarkably, this response is specific and involves a small number of functional pathways, which represent the generic toolkit for anhydrobiosis in plants and animals.

19 April 2016 in eLife
Verified
Journal Article
Open access
Cihan ErkutCihan Erkut
Cihan Erkut
VGVamshidhar R Gade
Vamshidhar R Gade
SLSunil Laxman
Sunil Laxman
TKTeymuras V Kurzchalia
Teymuras V Kurzchalia
Many organisms, including species from all kingdoms of life, can survive desiccation by entering a state with no detectable metabolism. To survive, C. elegans dauer larvae and stationary phase S. cerevisiae require elevated amounts of the disaccharide trehalose. We found that dauer larvae and stationary phase yeast switched into a gluconeogenic mode in which metabolism was reoriented toward production of sugars from non-carbohydrate sources. This mode depended on full activity of the glyoxylate shunt (GS), which enables synthesis of trehalose from acetate. The GS was especially critical during preparation of worms for harsh desiccation (preconditioning) and during the entry of yeast into stationary phase. Loss of the GS dramatically decreased desiccation tolerance in both organisms. Our results reveal a novel physiological role for the GS and elucidate a conserved metabolic rewiring that confers desiccation tolerance on organisms as diverse as worm and yeast.

25 July 2014 in Biology Open
Verified
Journal Article
Open access
PDF file
YTYusuke Toyoda
Yusuke Toyoda
Cihan ErkutCihan Erkut
Cihan Erkut
FPFrancisco Pan-Montojo
Francisco Pan-Montojo
SBSebastian Boland
Sebastian Boland
MSMartin P. Stewart
Martin P. Stewart
TKTeymuras V. Kurzchalia
Teymuras V. Kurzchalia
Parkinson's disease is associated with mitochondrial decline in dopaminergic neurons of the substantia nigra. One of the genes linked with the onset of Parkinson's disease, DJ-1/PARK7, belongs to a novel glyoxalase family and influences mitochondrial activity. It has been assumed that glyoxalases fulfill this task by detoxifying aggressive aldehyde by-products of metabolism. Here we show that supplying either D-lactate or glycolate, products of DJ-1, rescues the requirement for the enzyme in maintenance of mitochondrial potential. We further show that glycolic acid and D-lactic acid can elevate lowered mitochondrial membrane potential caused by silencing PINK-1, another Parkinson's related gene, as well as by paraquat, an environmental toxin known to be linked with Parkinson's disease. We propose that DJ-1 and consequently its products are components of a novel pathway that stabilizes mitochondria during cellular stress. We go on to show that survival of cultured mesencephalic dopaminergic neurons, defective in Parkinson's disease, is enhanced by glycolate and D-lactate. Because glycolic and D-lactic acids occur naturally, they are therefore a potential therapeutic route for treatment or prevention of Parkinson's disease.


4 November 2010 in Angewandte Chemie International Edition
Verified
Journal Article
Closed access
PDF file
SPSider Penkov
Sider Penkov
FMFanny Mende
Fanny Mende
VZVyacheslav Zagoriy
Vyacheslav Zagoriy
Cihan ErkutCihan Erkut
Cihan Erkut
RMRené Martin
René Martin
TKTeymuras V. Kurzchalia
Teymuras V. Kurzchalia