Diego Ramírez Contreras

Mr. Diego Ramírez Contreras

Benemérita Universidad Autónoma de Puebla, Puebla City, Mexico
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Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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29 September 2022 in Crystals
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DCDiego Ramírez Contreras
Diego Ramírez Contreras
AGAmalia García-García
Amalia García-García
BSBrenda L. Sánchez-Gaytán
Brenda L. Sánchez-Gaytán
LRLAURA ELVIRA SERRANO DE LA ROSA
LAURA ELVIRA SERRANO DE LA ROSA
FMFrancisco J. Melendez
Francisco J. Melendez
EGEnrique González-Vergara
Enrique González-Vergara
Citrulline (C6H13N3O3) is a non-protein amino acid found in watermelon. In physiological conditions, it is almost entirely present as a zwitterion, so its carboxylic and amine groups can act as Lewis donors, chelating metallic cations. In addition, Citrulline possesses a terminal ureide group of the aliphatic chain, which appears to be non-innocent. Although Citrulline is similar to other classical amino acids, only one coordination complex has been reported in the Cambridge Crystallographic Database. As part of our search for Casiopeina® analogs, we synthesized and characterized the copper bis-citrullinato complex, [Cu(Citr)2]n. The compound was described using UV-Vis, Infrared, and Raman spectroscopy, together with single-crystal X-ray diffraction. Computational tools were also used. The optimized structure, MEP map, IR and Raman spectra, and 1H and 13C chemical shifts were obtained with functional mPW1PW91 using 6-31G(d) basis set for N, O, C, and H atoms, and LANL2DZ basis set and ECP=LANL2DZ for the Cu atom. TD-mPW1PW91 calculations generated the UV-Vis spectrum. Finally, AIM and Hirshfeld surface analysis were used to examine non-covalent interactions. Previous investigations suggest Casiopeina®-like complexes can interact with DNA/RNA, creating potential anticancer chemicals. The [Cu(Citr)2]n complex’s polymeric nature and insolubility make it difficult for such purposes. However, the facile synthesis of D-Citrulline could be a novel way to find new applications for this interesting amino acid.

30 October 2024 in Inorganics
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SVSergio Vázquez-Rodríguez
Sergio Vázquez-Rodríguez
DCDiego Ramírez Contreras
Diego Ramírez Contreras
LNLisset Noriega
Lisset Noriega
AGAmalia García-García
Amalia García-García
BSBrenda L. Sánchez-Gaytán
Brenda L. Sánchez-Gaytán
EGEnrique González-Vergara
Enrique González-Vergara
COVID-19 has caused over seven million deaths globally due to its high transmission rate. The virus responsible for the disease requires a transmembrane protease serine type II (TMPRSS2-7MEQ) to infiltrate host cells and has been linked to several cancers, particularly prostate cancer. To investigate COVID-19 potential therapies, a series of Casiopeina-like copper complexes containing 1,10-Phenanthroline and amino acids were investigated as TMPRSS2 inhibitors. The molecular structures of twelve Phenanthroline copper complexes were calculated, and their global reactivity indices were analyzed using DFT and conceptual DFT methods. Three molecular docking algorithms were employed to identify the most effective inhibitors by examining their interactions with amino acid residues in the target protein’s catalytic activity triad (Asp345, His296, and Ser441). All complexes are docked above the catalytic site, blocking the interaction with substrates. The Phenanthroline complexes showed better interactions than the Bipyridine complexes, likely due to increased hydrophobic contacts. Analogs’ cationic nature and amino acids’ basic side chains bring them near the active site by interacting with Asp435. The top complexes in this study contain Ornithine, Lysine, and Arginine, making them promising alternatives for researching new drugs for COVID-19 and cancers like prostate cancer.

19 September 2023 in Crystals
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DCDiego Ramírez Contreras
Diego Ramírez Contreras
AGAmalia García-García
Amalia García-García
AMAngel Mendoza
Angel Mendoza
LRLAURA ELVIRA SERRANO DE LA ROSA
LAURA ELVIRA SERRANO DE LA ROSA
BSBrenda Sanchez-Gaytan
Brenda Sanchez-Gaytan
EGEnrique González-Vergara
Enrique González-Vergara
Citrulline is a non-protein amino acid that acts as a metabolic intermediate in the urea cycle and arginine synthesis. It is present in some foods, although its name derives from watermelon (Citrullus vulgaris), from which it was first identified. Under normal conditions, Citrulline exists as a zwitterion in aqueous solutions since its carboxylic and amine groups can act as Lewis donors to chelate metal cations. In addition, Citrulline possesses in the aliphatic chain a terminal ureide group, which could also coordinate. Although Citrulline is comparable to other classical amino acids, its coordination chemistry has yet to be explored. Only two metal complexes have been reported, and the copper complex is a polymeric and insoluble material. As part of our search for active Casiopeina® analogs, we created a more soluble complex by combining 2,2′-Bipyridine into a new mixed material, resulting in the mononuclear complex [Cu(Bipy)(Citr)(H2O)(NO3)]·H2O. Single-crystal X-ray diffraction, spectroscopic methods (FT-IR, UV-Vis, Raman), and mass spectrometry characterized the material. Interestingly, both isomers of Citrulline, R(D), and S(L) are present in the same crystal. In addition, the molecular structure and electronic properties of the complex were calculated using density functional theory (DFT). Non-covalent interactions were characterized using the atoms-in-molecules (AIM) approach and Hirshfeld surface (HS) analysis. This ternary complex containing Citrulline and 2,2′-Bipyridine will be used for docking calculations and preliminary biological studies using calf thymus DNA (CT-DNA) and plasmid pUC19 as a first approximation to cytotoxic activity against cancer cell lines.

31 May 2024 in Pharmaceutics
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DCDiego Ramírez Contreras
Diego Ramírez Contreras
SVSergio Vázquez-Rodríguez
Sergio Vázquez-Rodríguez
AGAmalia García-García
Amalia García-García
LNLisset Noriega
Lisset Noriega
AMAngel Mendoza
Angel Mendoza
EGEnrique González-Vergara
Enrique González-Vergara
Citrulline (C6H13N3O3) is an amino acid found in the body as a zwitterion. This means its carboxylic and amine groups can act as Lewis donors to chelate metal cations. In addition, citrulline possesses a terminal ureido group on its aliphatic chain, which also appears to coordinate. Here, two new mixed complexes of citrulline were made with 1,10-phenanthroline and 2,2′-bipyridine. These compounds, once dissolved in water, gave aquo-complexes that were subject to DFT studies and in vitro toxicity studies on cancer cell lines (HeLa, MDA-MB-231, HCT 15, and MCF7) showed promising results. Docking studies with DNA were also conducted, indicating potential anticancer properties.

24 June 2022 in IUCrData
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APAarón Pérez-Benítez
Aarón Pérez-Benítez
JAJorge Luis Ariza-Ramírez
Jorge Luis Ariza-Ramírez
MFMonserrat Fortis-Valera
Monserrat Fortis-Valera
RARosa Elena Arroyo-Carmona
Rosa Elena Arroyo-Carmona
MLMaría Isabel Martínez de la Luz
María Isabel Martínez de la Luz
SBSylvain Bernès
Sylvain Bernès
The title compound, (C4H12N5)4(C2H7N4O)2[V10O28]·4H2O, is a by-product obtained by reacting ammonium metavanadate(V), metformin hydrochloride and acetic acid in the presence of sodium hypochlorite, at pH = 5. The crystal structure comprises a decavanadate(V) anion (V10O28)6– lying on an inversion centre in space group P\overline{1}, while cations and solvent water molecules are placed in general positions, surrounding the anion, and forming numerous N—H...O and O—H...O hydrogen bonds. Metforminium (C4H12N5)+ and guanylurea (C2H7N4O)+ cations display the expected shape. Interestingly, in physiology the latter cation is known to be the main metabolite of the former one. The reported structure thus supports the role of sodium hypochlorite as an oxidizing reagent being able to degrade metformin hydrochloride to form guanylurea.