Emma Cotter

Dr. Emma Cotter

Woods Hole Oceanographic Institution
orcid

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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Verified
Journal Article
Open access
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Brian PolagyeBrian Polagye
Brian Polagye
JJJames Joslin
James Joslin
PMPaul Murphy
Paul Murphy
Emma CotterEmma Cotter
Emma Cotter
MSMitchell Scott
Mitchell Scott
ASAndrew Stewart
Andrew Stewart
Integrated instrumentation packages are an attractive option for environmental and ecological monitoring at marine energy sites, as they can support a range of sensors in a form factor compact enough for the operational constraints posed by energetic waves and currents. Here we present details of the architecture and performance for one such system—the Adaptable Monitoring Package—which supports active acoustic, passive acoustic, and optical sensing to quantify the physical environment and animal presence at marine energy sites. we describe cabled and autonomous deployments and contrast the relatively limited system capabilities in an autonomous operating mode with more expansive capabilities, including real-time data processing, afforded by shore power or in situ power harvesting from waves. Across these deployments, we describe sensor performance, outcomes for biological target classification algorithms using data from multibeam sonars and optical cameras, and the effectiveness of measures to limit biofouling and corrosion. On the basis of these experiences, we discuss the demonstrated requirements for integrated instrumentation, possible operational concepts for monitoring the environmental and ecological effects of marine energy converters using such systems, and the engineering trade-offs inherent in their development. Overall, we find that integrated instrumentation can provide powerful capabilities for observing rare events, managing the volume of data collected, and mitigating potential bias to marine animal behavior. These capabilities may be as relevant to the broader oceanographic community as they are to the emerging marine energy sector.

1 August 2020 in The Journal of the Acoustical Society of America
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Journal Article
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CBChristopher Bassett
Christopher Bassett
ALAndone C. Lavery
Andone C. Lavery
TSTimothy K. Stanton
Timothy K. Stanton
Emma CotterEmma Cotter
Emma Cotter
Recent estimates based on shipboard echosounders suggest that 50% or more of global fish biomass may reside in the mesopelagic zone (depths of ∼200–1000 m). Nonetheless, little is known about the acoustic target strengths (TS) of mesopelagic animals because ship-based measurements cannot resolve individual targets. As a result, biomass estimates of mesopelagic organisms are poorly constrained. Using an instrumented tow-body, broadband (18–90 kHz) TS measurements were obtained at depths from 70 to 850 m. A comparison between TS measurements at-depth and values used in a recent global estimate of mesopelagic biomass suggests lower target densities at most depths.

1 August 2020 in Journal of Atmospheric and Oceanic Technology
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Journal Article
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Emma CotterEmma Cotter
Emma Cotter
BPBrian Polagye
Brian Polagye
Multibeam sonars are widely used for environmental monitoring of fauna at marine renewable energy sites. However, they can rapidly accrue vast volumes of data, which poses a challenge for data processing. Here, using data from a deployment in a tidal channel with peak currents of 1–2 m s−1, we demonstrate the data-reduction benefits of real-time automatic classification of targets detected and tracked in multibeam sonar data. First, we evaluate classification capabilities for three machine learning algorithms: random forests, support vector machines, and k-nearest neighbors. For each algorithm, a hill-climbing search optimizes a set of hand-engineered attributes that describe tracked targets. The random forest algorithm is found to be most effective—in postprocessing, discriminating between biological and nonbiological targets with a recall rate of 0.97 and a precision of 0.60. In addition, 89% of biological targets are correctly classified as either seals, diving birds, fish schools, or small targets. Model dependence on the volume of training data is evaluated. Second, a real-time implementation of the model is shown to distinguish between biological targets and nonbiological targets with nearly the same performance as in postprocessing. From this, we make general recommendations for implementing real-time classification of biological targets in multibeam sonar data and the transferability of trained models.

29 July 2023 in Fish and Fisheries
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Journal Article
Open access
Emma CotterEmma Cotter
Emma Cotter
GSGarrett Staines
Garrett Staines
Marine current energy converters such as tidal and riverine turbines have the potential to provide reliable, clean power. The risk of collision of fishes with marine energy turbines is not yet well understood, in part due to the challenges associated with observing fish at turbine sites. Turbidity and light availability can limit the effectiveness of optical sensors like video cameras, motivating the use of acoustic cameras for this task. However, challenges persist in collecting and interpreting data acquired from acoustic cameras. Given the limited number of turbine deployments to date, it is prudent to draw on the application of acoustic cameras to monitor fish in other scenarios. This article synthesizes their use for other fisheries applications to inform best practices and set realistic expectations for the results of acoustic camera monitoring at turbine sites. We discuss six key tasks performed with acoustic cameras: detecting objects, identifying objects as fish, counting fish, measuring fish, classifying fish taxonomically and analysing fish behavior. Specific challenges to monitoring fish at turbine sites are discussed. This article is intended to serve as a reference for researchers, regulators and marine energy developers on effective use of acoustic cameras to monitor fish at turbine sites. The studies detailed in this article provide evidence that, in some scenarios, acoustic cameras can be used to inform the risk of fish collision with marine energy turbines but doing so requires careful study design and data processing.

1 July 2019 in Marine Pollution Bulletin
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Journal Article
Closed access
Emma CotterEmma Cotter
Emma Cotter
PMPaul Murphy
Paul Murphy
CBChristopher Bassett
Christopher Bassett
BWBenjamin Williamson
Benjamin Williamson
Brian PolagyeBrian Polagye
Brian Polagye

1 December 2017 in International Journal of Marine Energy
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Journal Article
Closed access
Emma CotterEmma Cotter
Emma Cotter
PMPaul Murphy
Paul Murphy
Brian PolagyeBrian Polagye
Brian Polagye