Facundo Roffet

Mr. Facundo Roffet

Universidad Nacional del Sur, Bahía Blanca, Buenos Aires, Argentina
orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 September 2022 in Brain Sciences
Verified
Journal Article
Open access
PDF file
Facundo RoffetFacundo Roffet
Facundo Roffet
Claudio DelrieuxClaudio Delrieux
Claudio Delrieux
GPGustavo Patow
Gustavo Patow
Several harmonization techniques have recently been proposed for connectomics/networks derived from resting-state functional magnetic resonance imaging (rs-fMRI) acquired at multiple sites. These techniques have the objective of mitigating site-specific biases that complicate its subsequent analysis and, therefore, compromise the quality of the results when these images are analyzed together. Thus, harmonization is indispensable when large cohorts are required in which the data obtained must be independent of the particular condition of each resonator, its make and model, its calibration, and other features or artifacts that may affect the significance of the acquisition. To date, no assessment of the actual efficacy of these harmonization techniques has been proposed. In this work, we apply recently introduced Information Theory tools to analyze the effectiveness of these techniques, developing a methodology that allows us to compare different harmonization models. We demonstrate the usefulness of this methodology by applying it to some of the most widespread harmonization frameworks and datasets. As a result, we are able to show that some of these techniques are indeed ineffective since the acquisition site can still be determined from the fMRI data after the processing.

31 July 2025 in Data
Verified
Journal Article
Open access
PDF file
MOMauro Andres Nievas Offidani
Mauro Andres Nievas Offidani
Facundo RoffetFacundo Roffet
Facundo Roffet
CGCarolina González Galtier
Carolina González Galtier
MMMiguel Massiris
Miguel Massiris
Claudio DelrieuxClaudio Delrieux
Claudio Delrieux
High-quality, openly accessible clinical datasets remain a significant bottleneck in advancing both research and clinical applications within medical artificial intelligence. Case reports, often rich in multimodal clinical data, represent an underutilized resource for developing medical AI applications. We present an enhanced version of MultiCaRe, a dataset derived from open-access case reports on PubMed Central. This new version addresses the limitations identified in the previous release and incorporates newly added clinical cases and images (totaling 93,816 and 130,791, respectively), along with a refined hierarchical taxonomy featuring over 140 categories. Image labels have been meticulously curated using a combination of manual and machine learning-based label generation and validation, ensuring a higher quality for image classification tasks and the fine-tuning of multimodal models. To facilitate its use, we also provide a Python package for dataset manipulation, pretrained models for medical image classification, and two dedicated websites. The updated MultiCaRe dataset expands the resources available for multimodal AI research in medicine. Its scale, quality, and accessibility make it a valuable tool for developing medical AI systems, as well as for educational purposes in clinical and computational fields.

Verified
Journal Article
Open access
PDF file
MFMartín Guillermo Frixione
Martín Guillermo Frixione
Facundo RoffetFacundo Roffet
Facundo Roffet
MAMiguel A. Adami
Miguel A. Adami
Marcelo BertellottiMarcelo Bertellotti
Marcelo Bertellotti
VDVerónica L. D'Amico
Verónica L. D'Amico
DPDébora Pollicelli
Débora Pollicelli
Recently, nuclear abnormalities in avian erythrocytes have been used as biomarkers of genotoxicity in several species. Anomalous shapes are usually detected in the nuclei by means of microscopy inspection. However, due to inter- and intra-observer variability, the classification of these blood cell abnormalities could be problematic for replicating research. Deep learning, as a powerful image analysis technique, can be used in this context to improve standardization in identifying the biological configurations of medical and veterinary importance. In this study, we present a standardized deep learning model for identifying and classifying abnormal shapes in erythrocyte nuclei in blood smears of the hemispheric and synanthropic Kelp Gull (Larus dominicanus). We trained three convolutional backbones (ResNet34 and ResNet50 architectures) to obtain models capable of detecting and classifying these abnormalities in blood cells. The analysis was performed at three discrimination levels of classification, with broad categories subdivided into increasingly specific subcategories (level 1: “normal”, “abnormal”, “other”; level 2: “normal”, “ENAs”, “micronucleus”, “other”; level 3: “normal”, “irregular”, “displaced”, “enucleated”, “micronucleus”, “other”). The results were more than adequate and very similar in levels 1 and 2 (F1-score 84.6% and 83.6%, and accuracy 83.9% and 82.6%). In level 3, performance was lower (F1-score 65.9% and accuracy 80.8%). It can be concluded that the level 2 analysis should be considered the most appropriate as it is more specific than level 1, with similar quality of performance. This method has proven to be a fast, efficient, and standardized approach that reduces the dependence on human supervision in the classification of nuclear abnormalities in avian erythrocytes, and can be adapted to be used in similar contexts with reduced effort.

29 May 2025 in Applied Ontology
Verified
Journal Article
Closed access
MOMauro Andres Nievas Offidani
Mauro Andres Nievas Offidani
Facundo RoffetFacundo Roffet
Facundo Roffet
Claudio DelrieuxClaudio Delrieux
Claudio Delrieux
CGCarolina González Galtier
Carolina González Galtier
MZMarcos Daniel Zarate
Marcos Daniel Zarate
Classification is a fundamental task in machine learning. While conventional methods—such as binary, multiclass, and multi-label classification—are effective for simpler problems, they may not adequately address the complexities of some real-world scenarios. This article introduces the Multiplex Classification Framework, a novel approach developed to tackle these and similar challenges through the integration of problem transformation, ontology engineering, and model ensembling. The framework offers several advantages, including adaptability to any number of classes and logical constraints, an innovative method for managing class imbalance, the elimination of confidence threshold selection, and a modular structure. Two experiments were conducted to compare the performance of conventional classification models with the multiplex approach. Our results demonstrate that the multiplex approach can improve classification performance significantly (up to 10% gain in overall F1 score), particularly in classification problems with a large number of classes and pronounced class imbalances. However, it also has limitations, as it requires a thorough understanding of the problem domain and some experience with ontology engineering, and it involves training multiple models, which can make the whole process more intricate. Overall, this methodology provides a valuable tool for researchers and practitioners dealing with complex classification problems in machine learning.

12 August 2024
Verified
Conference Paper
Closed access
DPDébora Pollicelli
Débora Pollicelli
Facundo RoffetFacundo Roffet
Facundo Roffet
LVLautaro Verdi
Lautaro Verdi
JBJuan Bajo
Juan Bajo
PBPaula Borda
Paula Borda
Claudio DelrieuxClaudio Delrieux
Claudio Delrieux
We present the development of an automatic dental diagnosis system based on artificial intelligence. The goal is to accurately support clinical decision-making in dentistry based on pantomographic images. We describe the construction of a large dataset of pantomographic images with high-quality annotations, the development of an intelligent model for semantic image interpretation and generation of presumptive diagnoses, and an application for end users. The model demonstrates the ability to correctly identify each individual tooth, detect multiple conditions and common pathologies in dental pieces, in case they arise, and generate a presumptive diagnostic text based on the information extracted from the image. The application, in the form of a digital web-based negatoscope, represents a technological advancement in radiology in line with the digital transformation era, offering a versatile and efficient tool for the interactive visualization of radiographic images, especially designed for dental professionals.